View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7950_low_42 (Length: 304)
Name: NF7950_low_42
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 40637199 - 40636915
Alignment:
| Q |
1 |
taaccacccacttctttgaaaagaatcctaggaataaga-ttggcaaccaaacaannnnnnngaaaaattcctaagaataaaattctcattatattttcg |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
40637199 |
taaccacccacttctttgaaaagaatcctaggaataaaaattggcaaccaaacacttttcttgaaaaattcctaggaataaaattctcattatattttca |
40637100 |
T |
|
| Q |
100 |
tgggaaagttaattccaggaagtaatttttgcatccggaaaacacattttccttcgcatattacatggtttctatttgtgtatccaattgtgtcaacaac |
199 |
Q |
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|||||||||||| |||||| ||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40637099 |
tgggaaagttaactccagggagtaatttttgcatctggaaaacaccttttccttcgcatattacatggcttctatttgtgtatccaattgtgtcaacaac |
40637000 |
T |
|
| Q |
200 |
caaagtattcccattcggccaaccttcgcaaacatatacaaatcgccaacatctgaaatagaatttgtgaagactaaactctaac |
284 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40636999 |
caaagtatttccattcggccaaccttcgcaaacatatacaaatcaccaacatctgaaatagaatttgtgaagactaaactctaac |
40636915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 25012962 - 25013103
Alignment:
| Q |
1 |
taaccacccacttctttgaaaagaatcctaggaataaga-ttggcaaccaaacaannnnnnngaaaaattcctaagaataaaattctcattatattttcg |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
25012962 |
taaccacccacttctttgaaaagaatcctaggaataaaaattggcaaccaaacacttttctt-aaaaattcctaagaataaa-ttctcattatattttcc |
25013059 |
T |
|
| Q |
100 |
tgggaaagttaattccaggaagtaatttttgcatccggaaaaca |
143 |
Q |
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| T |
25013060 |
tgggaaagttaattccaggaagaaatttttgcatccgggaaaca |
25013103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 38282910 - 38283051
Alignment:
| Q |
1 |
taaccacccacttctttgaaaagaatcctaggaataaga-ttggcaaccaaacaannnnnnngaaaaattcctaagaataaaattctcattatattttcg |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||| ||||||| |||||||||||||||| |
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| T |
38282910 |
taaccacccacttctttgaaaagaatcctaggaataaaaattggcaaccaaacacttttctt-aaaaattcctaggaataaa-ttctcattatattttcc |
38283007 |
T |
|
| Q |
100 |
tgggaaagttaattccaggaagtaatttttgcatccggaaaaca |
143 |
Q |
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||||||||||||||||||| || ||||||||||||||| ||||| |
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| T |
38283008 |
tgggaaagttaattccagggagaaatttttgcatccgggaaaca |
38283051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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