View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7950_low_49 (Length: 256)
Name: NF7950_low_49
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_low_49 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 38129705 - 38129472
Alignment:
| Q |
16 |
cccctttagcatatattagaaaaactaataatcattcactaacatgtaaatatataagcacatacatctaattatatgttaccaacttgcatgtataaga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
38129705 |
cccctttagcatatattagaaaaactaataatcattcactaacatgtaaatatataagcacatacatctaattat--gttaccaacttgcatctataaga |
38129608 |
T |
|
| Q |
116 |
atacattctaagaaaggtttggactttctcgagtagaattcattttgcttttagaattgattctaactcaaagctacaatttcgagcttttgccatgcaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38129607 |
atacattctaagaaaggtttggactttctcgagtagaattcattttgcttttagaattgattctaactcaaagctacaatttcgagcttttgccatgcaa |
38129508 |
T |
|
| Q |
216 |
ttgatttttagcctcaaatttattgttcatctcact |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
38129507 |
ttgatttttagcctcaaatttattgttcatctcact |
38129472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 3476545 - 3476480
Alignment:
| Q |
142 |
tctcgagtagaattcattttgcttttagaattgattctaactcaaagctacaatttcgagcttttg |
207 |
Q |
| |
|
||||||||| |||| ||||||| | |||||||||||||||| ||||||| || || ||||||||| |
|
|
| T |
3476545 |
tctcgagtaaaattgattttgcctccagaattgattctaacttaaagctaaaaattagagcttttg |
3476480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 242
Target Start/End: Original strand, 37541338 - 37541367
Alignment:
| Q |
213 |
caattgatttttagcctcaaatttattgtt |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
37541338 |
caattgatttttagcctcaaatttattgtt |
37541367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 45369122 - 45369199
Alignment:
| Q |
132 |
gtttggactttctcgagtagaattcattttgcttttagaattgattctaactcaaagctacaatttcgagcttttgcc |
209 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||||| ||||||||||| ||||| |||||| |||| ||||||||||| |
|
|
| T |
45369122 |
gtttggatgttctcaagtagaattgattttgcttctagaattgattttaacttgaagctagaattcggagcttttgcc |
45369199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 41516959 - 41517043
Alignment:
| Q |
144 |
tcgagtagaattcattttgcttttagaattgattctaactcaaagctacaatttcgagcttttgcc-atgcaattgatttttagc |
227 |
Q |
| |
|
|||||||||||| ||||||| |||| |||||||||||||| ||| || ||||| ||| ||||||| | ||||||||||||||| |
|
|
| T |
41516959 |
tcgagtagaattgattttgcgtttaaaattgattctaacttgaagttagaatttggagtttttgcctcttcaattgatttttagc |
41517043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 10860140 - 10860103
Alignment:
| Q |
214 |
aattgatttttagcctcaaatttattgttcatctcact |
251 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
10860140 |
aattgatttttagcctcaactttattgttcaactcact |
10860103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 33560686 - 33560637
Alignment:
| Q |
142 |
tctcgagtagaattcattttgcttttagaattgattctaactcaaagcta |
191 |
Q |
| |
|
|||||||||||||| ||||||| | |||||||||||||||| ||||||| |
|
|
| T |
33560686 |
tctcgagtagaattgattttgcctctagaattgattctaaccgaaagcta |
33560637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University