View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7950_low_52 (Length: 245)
Name: NF7950_low_52
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_low_52 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 53051056 - 53050827
Alignment:
| Q |
16 |
cattcctttcatcattcattgccgtggcaacaagctacctgcagataaatatttcctaaaagactagtgaaatacttaaacggatcaatgcatataactt |
115 |
Q |
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| T |
53051056 |
cattcctttcatcattcattgccgtggcaacatgctacctgcagataaatatttcctaaaagactagtgaaatacttaaacggatcaatgcatataactt |
53050957 |
T |
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| Q |
116 |
attttatttctgttgaatgatcaatgtgtatcactgtatatgtagtagatgacaagtatcaaatcacagtaaccataccaaaatttgatagagcagagtt |
215 |
Q |
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| T |
53050956 |
attttatttctgttgaatgatcaatgtgtatcactgtatatgtagtagatgacaagtatcaaatcacagtaaccataccaaaatttgatagagcagagtt |
53050857 |
T |
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| Q |
216 |
aagggctgtgacatcattccaaactccaac |
245 |
Q |
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| T |
53050856 |
aagggctgtgacatcattccaaactccaac |
53050827 |
T |
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