View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7950_low_53 (Length: 241)
Name: NF7950_low_53
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 26085086 - 26085223
Alignment:
| Q |
15 |
cagcctggtcttttccttccgtcaactccctcacctgctttttcagctctgcatttttatctgataagagtgccacaaattctgattttaacatgttaac |
114 |
Q |
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| T |
26085086 |
cagcctggtcttttccttccgtcaactccctcacctgttttttcagctctgcatttttatctgataagagtgccacaaattctgattttaacatgttaac |
26085185 |
T |
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| Q |
115 |
tctatctgatgattcagattcagctgaattttcctgcc |
152 |
Q |
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| T |
26085186 |
tctatctgatgattcagattcagctgaattttcctgcc |
26085223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 26097383 - 26097504
Alignment:
| Q |
31 |
ttccgtcaactccctcacctgctttttcagctctgcatttttatctgataagagtgccacaaattctgattttaacatgttaactctatctgatgattca |
130 |
Q |
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| T |
26097383 |
ttccgtcatctccctcaactgttttttcagctctgcatttttatctgataacagtgccacaaattctgattttaacatgttaactctatctgatgattca |
26097482 |
T |
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| Q |
131 |
gattcagctgaattttcctgcc |
152 |
Q |
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||||||||||||||||||||| |
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| T |
26097483 |
cattcagctgaattttcctgcc |
26097504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 26065398 - 26065519
Alignment:
| Q |
31 |
ttccgtcaactccctcacctgctttttcagctctgcatttttatctgataagagtgccacaaattctgattttaacatgttaactctatctgatgattca |
130 |
Q |
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| T |
26065398 |
ttccgtcaactcactcacttgttttttcagctctgcatttttatctgataagagcgccacaaattctgattttaacatgttaactttatctgatgattca |
26065497 |
T |
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| Q |
131 |
gattcagctgaattttcctgcc |
152 |
Q |
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||||| |||||| ||||||||| |
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| T |
26065498 |
gattctgctgaactttcctgcc |
26065519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 26036754 - 26036868
Alignment:
| Q |
35 |
gtcaactccctcacctgctttttcagctctgcatttttatctgataagagtgccacaaattctgattttaacatgttaactctatctgatgattcagatt |
134 |
Q |
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||||||||||||||||| ||||||||||| || ||||| ||||||| ||||||||| |||||||| |||||||| |||||||||||||||||| ||| |
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| T |
26036754 |
gtcaactccctcacctgttttttcagctcagcgtttttgtctgatac---tgccacaaactctgatttcaacatgttgactctatctgatgattcacatt |
26036850 |
T |
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| Q |
135 |
cagctgaattttcctgcc |
152 |
Q |
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||||||| |||||||||| |
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| T |
26036851 |
cagctgagttttcctgcc |
26036868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 26120685 - 26120745
Alignment:
| Q |
31 |
ttccgtcaactccctcacctgctttttcagctctgcatttttatctgataagagtgccaca |
91 |
Q |
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||||||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||| |
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| T |
26120685 |
ttccgtcaactccctcaactgtttttttagctctgcatttttatctgataaaagtgccaca |
26120745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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