View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7950_low_7 (Length: 618)

Name: NF7950_low_7
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7950_low_7
NF7950_low_7
[»] chr1 (3 HSPs)
chr1 (16-602)||(49168998-49169602)
chr1 (256-321)||(2790960-2791025)
chr1 (256-321)||(14471942-14472007)
[»] chr5 (3 HSPs)
chr5 (103-164)||(15808612-15808675)
chr5 (256-321)||(12842576-12842641)
chr5 (116-164)||(15832009-15832057)
[»] chr8 (1 HSPs)
chr8 (256-321)||(91429-91494)
[»] chr7 (1 HSPs)
chr7 (256-321)||(11716232-11716297)
[»] chr6 (2 HSPs)
chr6 (256-321)||(16772851-16772916)
chr6 (256-321)||(32707854-32707919)
[»] chr4 (1 HSPs)
chr4 (256-321)||(14026656-14026721)
[»] chr3 (2 HSPs)
chr3 (256-321)||(5378413-5378478)
chr3 (265-321)||(13719540-13719596)


Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 16 - 602
Target Start/End: Complemental strand, 49169602 - 49168998
Alignment:
Q  16 caaggaataaaaatggctatatgccacgtatataagatgaggttgatgctacaaggttgtaggagttaaagtgcttcaaactgatgatgctaacaaaaa- 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  49169602 caaggaataaaaatggctatatgccacgtatataagatgaggttgatgctacaaggttgtatgagttaaagtgcttcaaactgatgatgctaacaaaaaa 49169503  T
Q  115 tatcaatactagtactaatgaattaatatgcttgtcatcaataagaaactatattttgatgtctttgagtttcggcagatagtttgtgaattaatatgtt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49169502 tatcaatactagtactaatgaattaatatgcttgtcatcaataagaaactatattttgatgtctttgagtttcggcagatagtttgtgaattaatatgtt 49169403  T
Q  215 ttcaaacgttatctcaaagagttgatagtcccttcaataatatagtgcataaaatcaatgaaaatccttacaaggttgaactgccagaaatctatggtgt 314  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49169402 ttcaaacgttatctcaaagagttgatggtcccttcaataatatagtgcataaaatcaatgaaaatccttacaaggttgaactgccagaaatctatggtgt 49169303  T
Q  315 ctcagcatgtaacaatgttgccaatatttcgccatattgggatgatggatttgttattatttcgagggagtcaagatcccttgcaccatcctattattga 414  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49169302 ctcagcatgtaacaatgttgccaatctttcgccatattgggatgattgatttgttattatttcgagggagtcaagatcccttgcaccatcctattattga 49169203  T
Q  415 ctctaagctactatgtttgacatttccaaatttta--------tgtttccattgatgtattgattactactactatttcatatgtaattttgcctctaag 506  Q
    |||||||||||||| ||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49169202 ctctaagctactatctttgacatttccaaattttaccagactgtgtttccattgatgtattgattactactactatttcatatgtaattttgcctctaag 49169103  T
Q  507 attagtataaataaggtcattcctttcatgtaagatcat---------tgtaaaattgtgagtttctaatttgagaattaaagagtatattctctcttga 597  Q
    |||||||||||||||||||||||||||||||||||||||         | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49169102 attagtataaataaggtcattcctttcatgtaagatcattaaagtttatctaaaattgtgagtttctaatttgagaattaaagagtatattctctcttga 49169003  T
Q  598 cttct 602  Q
    |||||    
T  49169002 cttct 49168998  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 256 - 321
Target Start/End: Complemental strand, 2791025 - 2790960
Alignment:
Q  256 atagtgcataaaatcaatgaaaatccttacaaggttgaactgccagaaatctatggtgtctcagca 321  Q
    ||||| || ||||||||||| ||| |||||||||| ||| |||||| || ||||||||||||||||    
T  2791025 atagttcaaaaaatcaatgacaatgcttacaaggtagaattgccaggaacctatggtgtctcagca 2790960  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 256 - 321
Target Start/End: Complemental strand, 14472007 - 14471942
Alignment:
Q  256 atagtgcataaaatcaatgaaaatccttacaaggttgaactgccagaaatctatggtgtctcagca 321  Q
    ||||| || ||||||||||| ||| |||||||||| ||| |||||| || ||||||||||||||||    
T  14472007 atagtacagaaaatcaatgacaatgcttacaaggtagaattgccaggaacctatggtgtctcagca 14471942  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 15808612 - 15808675
Alignment:
Q  103 tgctaacaaaaat--atcaatactagtactaatgaattaatatgcttgtcatcaataagaaact 164  Q
    |||||||||||||  ||||||||| || ||| |||||| |||||||||||||||||| ||||||    
T  15808612 tgctaacaaaaattgatcaatacttgttctattgaattgatatgcttgtcatcaataggaaact 15808675  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 321
Target Start/End: Original strand, 12842576 - 12842641
Alignment:
Q  256 atagtgcataaaatcaatgaaaatccttacaaggttgaactgccagaaatctatggtgtctcagca 321  Q
    ||||| || |||||||| || ||| |||||||||| ||| |||||| || ||||||||||||||||    
T  12842576 atagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatggtgtctcagca 12842641  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 15832009 - 15832057
Alignment:
Q  116 atcaatactagtactaatgaattaatatgcttgtcatcaataagaaact 164  Q
    ||||||||| || ||| |||||| |||||||||||||||||| ||||||    
T  15832009 atcaatacttgttctattgaattgatatgcttgtcatcaataggaaact 15832057  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 321
Target Start/End: Original strand, 91429 - 91494
Alignment:
Q  256 atagtgcataaaatcaatgaaaatccttacaaggttgaactgccagaaatctatggtgtctcagca 321  Q
    ||||| || |||||||| || ||| |||||||||| ||| |||||| || ||||||||||||||||    
T  91429 atagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatggtgtctcagca 91494  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 321
Target Start/End: Original strand, 11716232 - 11716297
Alignment:
Q  256 atagtgcataaaatcaatgaaaatccttacaaggttgaactgccagaaatctatggtgtctcagca 321  Q
    ||||| || ||||||||||| ||| |||||||||| ||| ||| || || ||||||||||||||||    
T  11716232 atagttcaaaaaatcaatgacaatgcttacaaggtagaattgctaggaacctatggtgtctcagca 11716297  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 321
Target Start/End: Complemental strand, 16772916 - 16772851
Alignment:
Q  256 atagtgcataaaatcaatgaaaatccttacaaggttgaactgccagaaatctatggtgtctcagca 321  Q
    ||||| || |||||||| || ||| |||||||||| ||| |||||| || ||||||||||||||||    
T  16772916 atagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatggtgtctcagca 16772851  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 321
Target Start/End: Original strand, 32707854 - 32707919
Alignment:
Q  256 atagtgcataaaatcaatgaaaatccttacaaggttgaactgccagaaatctatggtgtctcagca 321  Q
    ||||| || |||||||| || ||| |||||||||| ||| |||||| || ||||||||||||||||    
T  32707854 atagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatggtgtctcagca 32707919  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 321
Target Start/End: Original strand, 14026656 - 14026721
Alignment:
Q  256 atagtgcataaaatcaatgaaaatccttacaaggttgaactgccagaaatctatggtgtctcagca 321  Q
    ||||| || ||||||||||| ||| |||||||||| ||| | |||| || ||||||||||||||||    
T  14026656 atagttcaaaaaatcaatgacaatgcttacaaggtagaatttccaggaacctatggtgtctcagca 14026721  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 321
Target Start/End: Complemental strand, 5378478 - 5378413
Alignment:
Q  256 atagtgcataaaatcaatgaaaatccttacaaggttgaactgccagaaatctatggtgtctcagca 321  Q
    ||||| || |||||||| || ||| |||||||||| ||| |||||| || ||||||||||||||||    
T  5378478 atagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatggtgtctcagca 5378413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 13719596 - 13719540
Alignment:
Q  265 aaaatcaatgaaaatccttacaaggttgaactgccagaaatctatggtgtctcagca 321  Q
    ||||||||||| ||| |||||||||| ||| | |||| || ||||||||||||||||    
T  13719596 aaaatcaatgacaatgcttacaaggtagaatttccaggaacctatggtgtctcagca 13719540  T

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