View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7950_low_9 (Length: 612)

Name: NF7950_low_9
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7950_low_9
NF7950_low_9
[»] chr3 (3 HSPs)
chr3 (22-588)||(45382702-45383278)
chr3 (247-336)||(50084778-50084869)
chr3 (505-551)||(47362558-47362604)
[»] chr6 (12 HSPs)
chr6 (500-580)||(27661703-27661783)
chr6 (500-537)||(26650237-26650274)
chr6 (500-537)||(26756205-26756242)
chr6 (496-536)||(12627824-12627864)
chr6 (500-540)||(29449688-29449728)
chr6 (425-475)||(8148268-8148318)
chr6 (428-481)||(20809178-20809231)
chr6 (500-529)||(28783014-28783043)
chr6 (482-539)||(34057962-34058019)
chr6 (426-462)||(29670971-29671007)
chr6 (503-539)||(30537508-30537544)
chr6 (428-476)||(31811989-31812037)
[»] chr1 (5 HSPs)
chr1 (232-330)||(31686728-31686828)
chr1 (182-335)||(25101927-25102080)
chr1 (491-536)||(264615-264660)
chr1 (440-480)||(27835482-27835522)
chr1 (500-536)||(43609830-43609866)
[»] chr5 (7 HSPs)
chr5 (275-329)||(27803033-27803089)
chr5 (500-539)||(28136673-28136712)
chr5 (232-336)||(41978263-41978369)
chr5 (232-300)||(16265448-16265516)
chr5 (500-537)||(645342-645379)
chr5 (491-536)||(11601688-11601733)
chr5 (428-476)||(12478334-12478382)
[»] chr7 (4 HSPs)
chr7 (500-540)||(43160491-43160531)
chr7 (491-538)||(10893872-10893919)
chr7 (500-542)||(650524-650566)
chr7 (500-536)||(18750887-18750923)
[»] chr8 (7 HSPs)
chr8 (433-475)||(14229600-14229642)
chr8 (500-540)||(32691750-32691790)
chr8 (273-326)||(40688136-40688191)
chr8 (491-539)||(41686804-41686852)
chr8 (273-336)||(31344424-31344487)
chr8 (248-326)||(7620090-7620172)
chr8 (491-539)||(31681833-31681881)
[»] chr2 (2 HSPs)
chr2 (446-542)||(9956949-9957045)
chr2 (249-336)||(9151330-9151417)
[»] chr4 (4 HSPs)
chr4 (500-550)||(10164460-10164510)
chr4 (500-538)||(28890768-28890806)
chr4 (496-532)||(29388374-29388410)
chr4 (500-540)||(45615427-45615467)


Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 22 - 588
Target Start/End: Complemental strand, 45383278 - 45382702
Alignment:
Q  22 atctcagtccacctcaaatcagttttacttttcatgaaattaaaataaattacttttcttatcttctattgtaacatatttatcaaatgtgttatttaag 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45383278 atctcagtccacctcaaatcagttttacttttcatgaaattaaaataaattacttttcttatcttctattgtaacatatttatcaaatgtgttatttaag 45383179  T
Q  122 ggtctatttacttcgtaaacacattttctattttcatttatcaaatgagccattttgattgagagaagattaaatgctaactagggatgacacatttcaa 221  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45383178 ggtctatttacttcgtaaacacgttttctattttcatttatcaaatgagccattttgattgagagaagattaaatgctaactagggatgacacatttcaa 45383079  T
Q  222 gaaatgacaaaaaatagctcatttaacattttcattgtttccgaaagtacaacacaattgttcacttcaagagtcttttctcattgttaacaagtaaaag 321  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45383078 gaaataacaaaaaatagctcatttaacattttcattgtttccgaaagtacaacacaattattcacttcaagagtcttttctcattgttaacaagtaaaag 45382979  T
Q  322 taacac-aaaatttagnnnnnnnnnnnntaagccgtaattctgtatgacaattaagtttcatagaagtggagaaagcaaaggaagtgactaattggtaaa 420  Q
    |||||| |||||||||            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  45382978 taacacaaaaatttagaaaaataaaaaataagccgtaattctgtatgacaa-taagtttcatagaagtggagaaagcaaaggaattgactaattggtaaa 45382880  T
Q  421 taatgaactttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtc-----------tgtcaccaacatatgtgattac 509  Q
    ||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||           ||||||| ||||||||||||||    
T  45382879 taatgaactttgtagcaca-atacttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgacaccaacatgtcaccgacatatgtgattac 45382781  T
Q  510 attcaaatatgttattttcttaaattactactgatgttgacgaatgagtgtcagtgtggagtccggtgttcatgtctct 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||    
T  45382780 attcaaatatgttattttcttaaattactactgatgttgacgaatgaatgtcagtgtgaagtccagtgttcatgtctct 45382702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 336
Target Start/End: Complemental strand, 50084869 - 50084778
Alignment:
Q  247 acattttcattgtttccgaaagtacaacacaattgttcacttcaagagtct--tttctcattgttaacaagtaaaagtaacacaaaatttag 336  Q
    |||||||||||||||| | || | |||  ||||||||||| ||||||||||  |||||| |||||||||||||||| ||| ||||| |||||    
T  50084869 acattttcattgtttctggaaattcaaggcaattgttcacatcaagagtctcctttctccttgttaacaagtaaaattaatacaaattttag 50084778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 505 - 551
Target Start/End: Complemental strand, 47362604 - 47362558
Alignment:
Q  505 attacattcaaatatgttattttcttaaattactactgatgttgacg 551  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  47362604 attacattcaattatgtaattttcttaaattattactgatgttgacg 47362558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 500 - 580
Target Start/End: Complemental strand, 27661783 - 27661703
Alignment:
Q  500 atgtgattacattcaaatatgttattttcttaaattactactgatgttgacgaatgagtgtcagtgtggagtccggtgttc 580  Q
    ||||||||||||| |||||| |||||||||||||||||||   |||||||||||| ||||| ||||| |||| ||||||||    
T  27661783 atgtgattacattgaaatatattattttcttaaattactatcaatgttgacgaatcagtgttagtgtcgagttcggtgttc 27661703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 500 - 537
Target Start/End: Original strand, 26650237 - 26650274
Alignment:
Q  500 atgtgattacattcaaatatgttattttcttaaattac 537  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26650237 atgtgattacattcaaatatgttattttcttaaattac 26650274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 500 - 537
Target Start/End: Original strand, 26756205 - 26756242
Alignment:
Q  500 atgtgattacattcaaatatgttattttcttaaattac 537  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26756205 atgtgattacattcaaatatgttattttcttaaattac 26756242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 536
Target Start/End: Original strand, 12627824 - 12627864
Alignment:
Q  496 acatatgtgattacattcaaatatgttattttcttaaatta 536  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  12627824 acatatatgattacattgaaatatgttattttcttaaatta 12627864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 500 - 540
Target Start/End: Complemental strand, 29449728 - 29449688
Alignment:
Q  500 atgtgattacattcaaatatgttattttcttaaattactac 540  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  29449728 atgtgattacattcaattatgttattttctgaaattactac 29449688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 425 - 475
Target Start/End: Original strand, 8148268 - 8148318
Alignment:
Q  425 gaactttgtagcacagacatttctgatcgaaggcatgtccggtgtccgaca 475  Q
    ||||| |||||||| |||||||| ||| ||||||||||| |||||||||||    
T  8148268 gaactatgtagcaccgacatttccgatggaaggcatgtctggtgtccgaca 8148318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 481
Target Start/End: Original strand, 20809178 - 20809231
Alignment:
Q  428 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacatttgtc 481  Q
    ||||||||||  |||| ||  |||||||||||||||||||||||||||| ||||    
T  20809178 ctttgtagcatcgacactttggatcgaaggcatgtccggtgtccgacatgtgtc 20809231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 529
Target Start/End: Original strand, 28783014 - 28783043
Alignment:
Q  500 atgtgattacattcaaatatgttattttct 529  Q
    ||||||||||||||||||||||||||||||    
T  28783014 atgtgattacattcaaatatgttattttct 28783043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 539
Target Start/End: Complemental strand, 34058019 - 34057962
Alignment:
Q  482 tgtgtctgtcaccaacatatgtgattacattcaaatatgttattttcttaaattacta 539  Q
    |||||||| |||| ||| ||||||||||| |||| ||||| ||||||||| |||||||    
T  34058019 tgtgtctgacaccgacacatgtgattacagtcaattatgtcattttcttatattacta 34057962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 426 - 462
Target Start/End: Complemental strand, 29671007 - 29670971
Alignment:
Q  426 aactttgtagcacagacatttctgatcgaaggcatgt 462  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  29671007 aactttgtaccaccgacatttctgatcgaaggcatgt 29670971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 503 - 539
Target Start/End: Complemental strand, 30537544 - 30537508
Alignment:
Q  503 tgattacattcaaatatgttattttcttaaattacta 539  Q
    |||| |||||||| |||||||||||||||||||||||    
T  30537544 tgataacattcaattatgttattttcttaaattacta 30537508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 476
Target Start/End: Complemental strand, 31812037 - 31811989
Alignment:
Q  428 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacat 476  Q
    ||||||||||| ||||  ||||||| ||||||||||| |||||||||||    
T  31812037 ctttgtagcactgacacctctgatcaaaggcatgtccagtgtccgacat 31811989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 31686828 - 31686728
Alignment:
Q  232 aaaatagctcatttaacattttcattgtttccgaaagtacaacacaattgttcacttcaagagtct--tttctcattgttaacaagtaaaagtaacacaa 329  Q
    ||||||| || ||| |||||||||||||||  | || | ||| ||||| |||||||||||||||||  |||||| |||||||||||||||| ||||||||    
T  31686828 aaaatagttcttttgacattttcattgttttaggaaatgcaagacaatcgttcacttcaagagtctcttttctccttgttaacaagtaaaactaacacaa 31686729  T
Q  330 a 330  Q
    |    
T  31686728 a 31686728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 335
Target Start/End: Complemental strand, 25102080 - 25101927
Alignment:
Q  182 gagagaagattaaatgctaactagggatgacacatttcaagaaatgacaaaaaatagctcatttaacattttcattgtttccgaaagtacaacacaattg 281  Q
    |||||||||| |||||||| ||||||| ||  || |||| ||||  |  ||||||||||||||   |||||||||| |||||  || ||||| |||| ||    
T  25102080 gagagaagataaaatgctagctagggacgatgcacttca-gaaaaaaataaaaatagctcattaggcattttcattatttccagaaatacaagacaaatg 25101982  T
Q  282 ttcacttcaagagtct-tttctcattgttaacaagtaaaagtaacacaaaattta 335  Q
    ||| || ||||||||| |||||| ||||||| |||||||| | ||||||| ||||    
T  25101981 ttccctccaagagtctctttctccttgttaagaagtaaaacttacacaaatttta 25101927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 536
Target Start/End: Complemental strand, 264660 - 264615
Alignment:
Q  491 caccaacatatgtgattacattcaaatatgttattttcttaaatta 536  Q
    |||||||| ||||||||||||| || ||||||| ||||||||||||    
T  264660 caccaacacatgtgattacatttaagtatgttactttcttaaatta 264615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 440 - 480
Target Start/End: Complemental strand, 27835522 - 27835482
Alignment:
Q  440 gacatttctgatcgaaggcatgtccggtgtccgacatttgt 480  Q
    |||| ||||||| ||||||||||| ||||||||||||||||    
T  27835522 gacacttctgattgaaggcatgtctggtgtccgacatttgt 27835482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 500 - 536
Target Start/End: Original strand, 43609830 - 43609866
Alignment:
Q  500 atgtgattacattcaaatatgttattttcttaaatta 536  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  43609830 atgtgattacattcaattatgttattttctcaaatta 43609866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 275 - 329
Target Start/End: Original strand, 27803033 - 27803089
Alignment:
Q  275 acaattgttcacttcaagagtct--tttctcattgttaacaagtaaaagtaacacaa 329  Q
    |||||||||||||||||||||||  |||||| |||||||||||||||| ||||||||    
T  27803033 acaattgttcacttcaagagtctcttttctccttgttaacaagtaaaactaacacaa 27803089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 500 - 539
Target Start/End: Complemental strand, 28136712 - 28136673
Alignment:
Q  500 atgtgattacattcaaatatgttattttcttaaattacta 539  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  28136712 atgtgattacattgaaatatgttattttcttaaattacta 28136673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 232 - 336
Target Start/End: Original strand, 41978263 - 41978369
Alignment:
Q  232 aaaatagctcatttaacattttcattgtttccgaaagtacaacacaattgttcacttcaagag--tcttttctcattgttaacaagtaaaagtaacacaa 329  Q
    ||||||| || ||| |||||||||||||||||| || | ||| |||||| |||||||||||||  |||| |||  ||| ||||||||||||  |||||||    
T  41978263 aaaatagttcttttgacattttcattgtttccggaaatgcaaaacaattcttcacttcaagagcctcttatcttcttgctaacaagtaaaaacaacacaa 41978362  T
Q  330 aatttag 336  Q
    | |||||    
T  41978363 attttag 41978369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 16265448 - 16265516
Alignment:
Q  232 aaaatagctcatttaacattttcattgtttccgaaagtacaacacaattgttcacttcaagagtctttt 300  Q
    |||||||||  ||| |||||||||||||||| | || | ||| |||| |||||||||||||||||||||    
T  16265448 aaaatagctattttgacattttcattgtttctggaaatgcaagacaaatgttcacttcaagagtctttt 16265516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 537
Target Start/End: Complemental strand, 645379 - 645342
Alignment:
Q  500 atgtgattacattcaaatatgttattttcttaaattac 537  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  645379 atgtgattacattcaattatgtcattttcttaaattac 645342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 536
Target Start/End: Complemental strand, 11601733 - 11601688
Alignment:
Q  491 caccaacatatgtgattacattcaaatatgttattttcttaaatta 536  Q
    ||||||||||||||||||||||||| ||  ||| ||||||||||||    
T  11601733 caccaacatatgtgattacattcaattaatttagtttcttaaatta 11601688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 476
Target Start/End: Complemental strand, 12478382 - 12478334
Alignment:
Q  428 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacat 476  Q
    ||||||||||| |||||||||||| |||||| |||| |||||| |||||    
T  12478382 ctttgtagcaccgacatttctgatggaaggcgtgtctggtgtctgacat 12478334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 500 - 540
Target Start/End: Complemental strand, 43160531 - 43160491
Alignment:
Q  500 atgtgattacattcaaatatgttattttcttaaattactac 540  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  43160531 atgtgattacattcaattatgttattttcttaaattactac 43160491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 491 - 538
Target Start/End: Original strand, 10893872 - 10893919
Alignment:
Q  491 caccaacatatgtgattacattcaaatatgttattttcttaaattact 538  Q
    |||||||| |||||||||||||||| ||||| ||||||||||||||||    
T  10893872 caccaacacatgtgattacattcaattatgtcattttcttaaattact 10893919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 542
Target Start/End: Complemental strand, 650566 - 650524
Alignment:
Q  500 atgtgattacattcaaatatgttattttcttaaattactactg 542  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||    
T  650566 atgtgattgcattcaattatgtcattttcttaaattactactg 650524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 500 - 536
Target Start/End: Complemental strand, 18750923 - 18750887
Alignment:
Q  500 atgtgattacattcaaatatgttattttcttaaatta 536  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  18750923 atgtgattacattcaattatgtcattttcttaaatta 18750887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 475
Target Start/End: Complemental strand, 14229642 - 14229600
Alignment:
Q  433 tagcacagacatttctgatcgaaggcatgtccggtgtccgaca 475  Q
    |||||| |||| |||||||||||||||||||||||||||||||    
T  14229642 tagcactgacacttctgatcgaaggcatgtccggtgtccgaca 14229600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 500 - 540
Target Start/End: Complemental strand, 32691790 - 32691750
Alignment:
Q  500 atgtgattacattcaaatatgttattttcttaaattactac 540  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  32691790 atgtgattacattcaattatgtcattttcttaaattactac 32691750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 273 - 326
Target Start/End: Complemental strand, 40688191 - 40688136
Alignment:
Q  273 acacaattgttcacttcaagagtct--tttctcattgttaacaagtaaaagtaaca 326  Q
    |||||||||||||||||||||||||  | ||||||||||| ||||||||| |||||    
T  40688191 acacaattgttcacttcaagagtctagtatctcattgttaccaagtaaaattaaca 40688136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 491 - 539
Target Start/End: Original strand, 41686804 - 41686852
Alignment:
Q  491 caccaacatatgtgattacattcaaatatgttattttcttaaattacta 539  Q
    |||||||| ||||||||| | |||| |||||||||||||||||||||||    
T  41686804 caccaacacatgtgattagactcaactatgttattttcttaaattacta 41686852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 336
Target Start/End: Original strand, 31344424 - 31344487
Alignment:
Q  273 acacaattgttcacttcaagagtcttttctcattgttaacaagtaaaagtaacacaaaatttag 336  Q
    |||||| ||||||||||||||||||| |||| |||| |  |||||||| ||||||||| |||||    
T  31344424 acacaagtgttcacttcaagagtcttatctctttgtcaggaagtaaaattaacacaaactttag 31344487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 326
Target Start/End: Original strand, 7620090 - 7620172
Alignment:
Q  248 cattttcattgtttccgaaagtacaacacaattgttcacttcaagagtct----tttctcattgttaacaagtaaaagtaaca 326  Q
    |||||||||| |||  |||| | ||| ||||||||| |||||||||||||    |||||| |||||||||||||||| |||||    
T  7620090 cattttcattatttttgaaaatgcaagacaattgttaacttcaagagtctctcttttctccttgttaacaagtaaaactaaca 7620172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 491 - 539
Target Start/End: Original strand, 31681833 - 31681881
Alignment:
Q  491 caccaacatatgtgattacattcaaatatgttattttcttaaattacta 539  Q
    |||| ||| |||||||| ||||||| ||||| |||||||||||||||||    
T  31681833 caccgacacatgtgatttcattcaattatgtcattttcttaaattacta 31681881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 446 - 542
Target Start/End: Original strand, 9956949 - 9957045
Alignment:
Q  446 tctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgtcaccaacatatgtgattacattcaaatatgttattttcttaaattactactg 542  Q
    ||||||| ||||||||||||||||| ||||| |||| ||||| | |||  ||| |||| ||||| ||||||||  ||||||| | |||||| |||||    
T  9956949 tctgatcaaaggcatgtccggtgtctgacatgtgtcggtgtccggcacggacacatgtcattacgttcaaataatttattttgtcaaattattactg 9957045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 336
Target Start/End: Original strand, 9151330 - 9151417
Alignment:
Q  249 attttcattgtttccgaaagtacaacacaattgttcacttcaagagtcttttctcattgttaacaagtaaaagtaacacaaaatttag 336  Q
    |||||||| ||||||  || | ||| ||||||||||||||||||||||||||||| || ||| || |||  | ||||||||| |||||    
T  9151330 attttcatcgtttccagaaatgcaagacaattgttcacttcaagagtcttttctctttattaccatgtaggaataacacaaattttag 9151417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 550
Target Start/End: Complemental strand, 10164510 - 10164460
Alignment:
Q  500 atgtgattacattcaaatatgttattttcttaaattactactgatgttgac 550  Q
    |||||||||||||||| ||||  |||||||||||||||||| | |||||||    
T  10164510 atgtgattacattcaattatgccattttcttaaattactaccggtgttgac 10164460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 538
Target Start/End: Complemental strand, 28890806 - 28890768
Alignment:
Q  500 atgtgattacattcaaatatgttattttcttaaattact 538  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  28890806 atgtgattgcattcaattatgttattttcttaaattact 28890768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 532
Target Start/End: Original strand, 29388374 - 29388410
Alignment:
Q  496 acatatgtgattacattcaaatatgttattttcttaa 532  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  29388374 acatatgtgattacattcaattatgtcattttcttaa 29388410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 500 - 540
Target Start/End: Original strand, 45615427 - 45615467
Alignment:
Q  500 atgtgattacattcaaatatgttattttcttaaattactac 540  Q
    |||||||||| ||||| ||||| ||||||||||||||||||    
T  45615427 atgtgattacgttcaattatgtcattttcttaaattactac 45615467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University