View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7951_high_1 (Length: 522)
Name: NF7951_high_1
Description: NF7951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7951_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 19 - 504
Target Start/End: Complemental strand, 36955547 - 36955066
Alignment:
| Q |
19 |
atatgggaggttgtcatacgatttatttgattcttggagccttagaatgatgagtgttaacattgacagcttttaatactttaaaacctatcattgaggg |
118 |
Q |
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| T |
36955547 |
atatgggaggttgtcatacgatttatttgattcttggagccttagaatgatgagtgttaacattgacagcttttaatactttaaaacctatcattgaggg |
36955448 |
T |
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| Q |
119 |
gcatgtggaaagagtaacgtgattaccagacaattatacatttgcaattatcatagaaatgattgtgctccaattaggtctcctatcattgaatttttgg |
218 |
Q |
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| T |
36955447 |
gcatgtggaaagagtaacgtgattaccagacaattatacatttgcaattatcatagaaatgattgtgctccaattaggtctcctatcattgaatttttgg |
36955348 |
T |
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| Q |
219 |
ttattcttgttgatccatatcacattgacaattttaaagaatagctgcaatgatgacaattttaagttgaatgctccaacctttaatac--ataacatct |
316 |
Q |
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| T |
36955347 |
ttattcttgttgatccatatcacattgacaattttaaagaatagctgcaatgatgacaattttgagttgaatgctccaacctttaatacatataacatct |
36955248 |
T |
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| Q |
317 |
gaaacatccatagttgagtttaagttgctattaatattgattatagttatagagcaaaaccaaatccataatgacaaagcaaaatggcattgtaaaaaca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36955247 |
gaaacatccatagttgagtttaagttgctattaatattga------ttatagagcaaaaccaaatccataatgacaaagcaaaatggcattgtaaaaaca |
36955154 |
T |
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| Q |
417 |
gatgatgagaagaatatgcttgcttgttgtacaagttataaattgaggggtgattgcaaccccttctcatcaaacattcctatggatg |
504 |
Q |
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| T |
36955153 |
gatgatgagaaaaatatgcttgcttgttgtacaagttataaattgaggggtgattgcaaccccttctcatcaaacattcctatggatg |
36955066 |
T |
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