View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7951_high_3 (Length: 318)
Name: NF7951_high_3
Description: NF7951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7951_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 40276412 - 40276719
Alignment:
| Q |
1 |
caccatccacattattggcaatttggatattattagaactattagaatgaggaagccgcgcttgaagatcttgaaggaaacgaagaaagaaagggtttgt |
100 |
Q |
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| T |
40276412 |
caccatccacattattggcaatttggatattattagaactattagaatgaggaagccgcgcttgaagatcttgaaggaaacgaagaaagaaagggtttgt |
40276511 |
T |
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| Q |
101 |
ggaattaatcataagcacttcattggaagtgataattgcttgaatgtgttctaagttaacgacaatagctttttctcgtcctaagatagaagaagggtta |
200 |
Q |
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| T |
40276512 |
ggaattaatcataagcacttcattggaagtgataattgcttgaatgtgttctaagttaacgacaatagctttttctcgtcctaagatagaagaagggtta |
40276611 |
T |
|
| Q |
201 |
gagagttttggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatggagtgtttgtcaatatcttcaacgcgtgattcacctgtct |
300 |
Q |
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| T |
40276612 |
gagagttttggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatggagtgtttgtcaatatcttcaacgcgtgattcacctgtct |
40276711 |
T |
|
| Q |
301 |
ctgctact |
308 |
Q |
| |
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||| |||| |
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| T |
40276712 |
ctgatact |
40276719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 62 - 298
Target Start/End: Original strand, 39625193 - 39625429
Alignment:
| Q |
62 |
ttgaagatcttgaaggaaacgaagaaagaaagggtttgtggaattaatcataagcacttcattggaagtgataattgcttgaatgtgttctaagttaacg |
161 |
Q |
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| T |
39625193 |
ttgaagatcttgaagaaagcgaataaagaaagggtcaattgaattaatcataagcacttcattcgaagtgataatcgctctaatgtgttctaagttaaca |
39625292 |
T |
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| Q |
162 |
acaatagctttttctcgtcctaagatagaagaagggttagagagttttggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatgg |
261 |
Q |
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| T |
39625293 |
ataatggctttttctcgtcctaagatagaagaaggctgagaaagctttgtatcaaagactctaaggtcacgtgcaggtaaacctgttcgtcgcatgatgg |
39625392 |
T |
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| Q |
262 |
agtgtttgtcaatatcttcaacgcgtgattcacctgt |
298 |
Q |
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| T |
39625393 |
agtgtttgtcgatatcctcgacacgtgattcacctgt |
39625429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 62 - 298
Target Start/End: Original strand, 39634743 - 39634979
Alignment:
| Q |
62 |
ttgaagatcttgaaggaaacgaagaaagaaagggtttgtggaattaatcataagcacttcattggaagtgataattgcttgaatgtgttctaagttaacg |
161 |
Q |
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| T |
39634743 |
ttgaagatcttgaagaaagcgaataaagaaagggtcaattgaattaatcataagcacttcattcgaagtgataatcgctctaatgtgttctaagttaaca |
39634842 |
T |
|
| Q |
162 |
acaatagctttttctcgtcctaagatagaagaagggttagagagttttggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatgg |
261 |
Q |
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| ||| ||||||||||||||||||||||||||||| | ||| || |||| ||||| ||||||||||||| | |||||| ||||||||| ||||||||| |
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| T |
39634843 |
ataatggctttttctcgtcctaagatagaagaaggctgagaaagctttgtatcaaagactctaaggtcacgtgcaggtaaacctgttcgtcgcatgatgg |
39634942 |
T |
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| Q |
262 |
agtgtttgtcaatatcttcaacgcgtgattcacctgt |
298 |
Q |
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| T |
39634943 |
agtgtttgtcgatatcctcgacacgtgattcacctgt |
39634979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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