View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7951_high_4 (Length: 306)

Name: NF7951_high_4
Description: NF7951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7951_high_4
NF7951_high_4
[»] scaffold0570 (1 HSPs)
scaffold0570 (28-290)||(10013-10275)
[»] scaffold0201 (1 HSPs)
scaffold0201 (14-290)||(13051-13327)
[»] chr3 (10 HSPs)
chr3 (77-235)||(23448846-23449004)
chr3 (77-235)||(23500609-23500767)
chr3 (14-290)||(23480233-23480510)
chr3 (22-229)||(23464942-23465149)
chr3 (22-229)||(23406288-23406495)
chr3 (77-190)||(23353459-23353572)
chr3 (78-229)||(23441455-23441606)
chr3 (78-229)||(23473987-23474138)
chr3 (176-288)||(23455668-23455782)
chr3 (76-129)||(13805986-13806039)
[»] chr1 (2 HSPs)
chr1 (78-132)||(45301895-45301949)
chr1 (78-126)||(11210948-11210996)
[»] chr8 (1 HSPs)
chr8 (73-122)||(39425066-39425115)
[»] chr2 (2 HSPs)
chr2 (96-132)||(12979147-12979183)
chr2 (80-132)||(17511349-17511400)


Alignment Details
Target: scaffold0570 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 28 - 290
Target Start/End: Complemental strand, 10275 - 10013
Alignment:
Q  28 tatggcaaggcatgtcaacatcattgttcacttctccaaataattgggcttgtttactttctaaaaatatttttagctttcattttctaaaatttatgtt 127  Q
    |||||| |||||  |||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10275 tatggccaggcacatcaacatcattgtttacttctccaaataattgggcctgtttactttctaaaattatttttagctttcattttctaaaatttatgtt 10176  T
Q  128 catttccaatcacgaatatggagatga-aaaacttgtgtagtaggaaattgtgctatattagaaaacaaaacttgcaaatcataggatatagtttattga 226  Q
    ||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  10175 catttccaatcacaaatatggagatgaaaaaacttgtgtagtaagaaattgtgctatattagaaaac-aaacttgcaaatcataggatatagcttattga 10077  T
Q  227 tttacttagcattttttaaacttacaagtcatgacatgtggaaagttggatagttcgttttact 290  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10076 tttacttagaattttttaaacttacaagtcatgacatgtggaaagttggatagttcgttttact 10013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 290
Target Start/End: Original strand, 13051 - 13327
Alignment:
Q  14 aaggtcatatcaactatggcaaggcatgtcaacatcattgttcacttctccaaataattgggcttgtttactttctaaaaatatttttagctttcatttt 113  Q
    |||||||||||||||||||| |||||  | ||||||||||||||||||||||||||||| ||| |||||||||||||||| || ||||||||||||||||    
T  13051 aaggtcatatcaactatggccaggcacataaacatcattgttcacttctccaaataattcggcctgtttactttctaaaattaattttagctttcatttt 13150  T
Q  114 ctaaaatttatgttcatttccaatcacgaatatggagatgaaaaacttgtgtagtaggaaattgtgctatattagaaaacaaaacttgcaaatcatagga 213  Q
     |||||| ||||||||||||||| || ||||| |||||||||| |||  |||||||   ||||||||||| ||| |||||||||||||||||||||||||    
T  13151 ttaaaatctatgttcatttccaaccatgaataaggagatgaaagactcatgtagtaaataattgtgctatgttaaaaaacaaaacttgcaaatcatagga 13250  T
Q  214 tatagtttattgatttacttagcattttttaaacttacaagtcatgacatgtggaaagttggatagttcgttttact 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13251 tatagtttattgatttacttagcattttttaaacttacaagtcatgacatgtggaaagttggatagttcgttttact 13327  T

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Target: chr3 (Bit Score: 131; Significance: 6e-68; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 77 - 235
Target Start/End: Original strand, 23448846 - 23449004
Alignment:
Q  77 ttgtttactttctaaaaatatttttagctttcattttctaaaatttatgttcatttccaatcacgaatatggagatgaaaaacttgtgtagtaggaaatt 176  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||    
T  23448846 ttgtttactttctaaagttattattagctttcattttctcaaatttatgttcatttccaatcacgaatatggaaatgaaaaacttgtgtagtaaaaaatt 23448945  T
Q  177 gtgctatattagaaaacaaaacttgcaaatcataggatatagtttattgatttacttag 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23448946 gtgctatattagaaaacaaaacttgcaaatcataggatatagtttattgatttacttag 23449004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 77 - 235
Target Start/End: Original strand, 23500609 - 23500767
Alignment:
Q  77 ttgtttactttctaaaaatatttttagctttcattttctaaaatttatgttcatttccaatcacgaatatggagatgaaaaacttgtgtagtaggaaatt 176  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||    
T  23500609 ttgtttactttctaaagttattattagctttcattttctcaaatttatgttcatttccaatcacgaatatggagatgaaaaacttgtgttgtaaaaaatt 23500708  T
Q  177 gtgctatattagaaaacaaaacttgcaaatcataggatatagtttattgatttacttag 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23500709 gtgctatattagaaaacaaaacttgcaaatcataggatatagtttattgatttacttag 23500767  T

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Target: chr3; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 14 - 290
Target Start/End: Original strand, 23480233 - 23480510
Alignment:
Q  14 aaggtcatatcaactatggcaaggcatgtcaacatcattgttcacttctccaaataattgggcttgtttactttctaaaaatatttttagctttcatttt 113  Q
    |||||||||||||||||||| |||||  | ||||||||||||||||||||||||||||| ||| |||||||||||||||| || ||||||||||||||||    
T  23480233 aaggtcatatcaactatggccaggcacataaacatcattgttcacttctccaaataattcggcctgtttactttctaaaattaattttagctttcatttt 23480332  T
Q  114 ctaaaatttatgttcatttccaatcacgaatatggagatgaaaaacttgtgtagtaggaaattgtgctatattagaaaacaaaacttgcaaatcatagga 213  Q
     |||||| ||||||||||||||| || ||||| |||||||||| |||  |||||||   |||||||||||||||||||||||||| || |||| |||  |    
T  23480333 ttaaaatctatgttcatttccaaccatgaataaggagatgaaagactcatgtagtatataattgtgctatattagaaaacaaaacatgaaaattatataa 23480432  T
Q  214 tatagtttatt-gatttacttagcattttttaaacttacaagtcatgacatgtggaaagttggatagttcgttttact 290  Q
     |||||||||| | ||||||||| |||||   ||| ||||||||||| |||||  |||| | ||||||||||||||||    
T  23480433 aatagtttattggttttacttagaattttgagaacatacaagtcatggcatgtacaaagctcgatagttcgttttact 23480510  T

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Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 22 - 229
Target Start/End: Original strand, 23464942 - 23465149
Alignment:
Q  22 atcaactatggcaaggcatgtcaacatcattgttcacttctccaaataattgggcttg-tttactttctaaaaatatttttagctttcattttctaaaat 120  Q
    |||||||||||| |||||  ||||  |||||||||||||||| |||||||| ||| || |||||||||||||| ||| ||| |  |||| ||||||||||    
T  23464942 atcaactatggccaggcacatcaatgtcattgttcacttctcgaaataatttggcctggtttactttctaaaattatatttcgtcttcaatttctaaaat 23465041  T
Q  121 ttatgttcatttccaatcacgaatatggagatgaaaaacttgtgtagtaggaaattgtgctatattagaaaacaaaacttgcaaatcataggatatagtt 220  Q
    ||||||||||||||||  || ||||||||||||||| |||| || ||||   |||||||||||||||| ||||||||| | ||||| |||||| ||||||    
T  23465042 ttatgttcatttccaactacaaatatggagatgaaagacttatgaagtaaacaattgtgctatattag-aaacaaaacattcaaatgataggaaatagtt 23465140  T
Q  221 tattgattt 229  Q
    |||||||||    
T  23465141 tattgattt 23465149  T

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Target: chr3; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 22 - 229
Target Start/End: Original strand, 23406288 - 23406495
Alignment:
Q  22 atcaactatggcaaggcatgtcaacatcattgttcacttctccaaataattgggcttg-tttactttctaaaaatatttttagctttcattttctaaaat 120  Q
    |||||||||||| |||||  ||||  |||||||||||||||| |||||||| ||| || |||||||||||||| ||| ||| |  |||  ||||||||||    
T  23406288 atcaactatggccaggcacatcaatgtcattgttcacttctcgaaataatttggcctggtttactttctaaaattatatttcgtcttcgatttctaaaat 23406387  T
Q  121 ttatgttcatttccaatcacgaatatggagatgaaaaacttgtgtagtaggaaattgtgctatattagaaaacaaaacttgcaaatcataggatatagtt 220  Q
    ||||||||||||||||  || ||||||||||||||| |||| || ||||   |||||||||||||||| ||||||||| | ||||| |||||| ||||||    
T  23406388 ttatgttcatttccaactacaaatatggagatgaaagacttatgaagtaaataattgtgctatattag-aaacaaaacattcaaatgataggaaatagtt 23406486  T
Q  221 tattgattt 229  Q
    |||||||||    
T  23406487 tattgattt 23406495  T

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Target: chr3; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 77 - 190
Target Start/End: Original strand, 23353459 - 23353572
Alignment:
Q  77 ttgtttactttctaaaaatatttttagctttcattttctaaaatttatgttcatttccaatcacgaatatggagatgaaaaacttgtgtagtaggaaatt 176  Q
    ||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||   ||||    
T  23353459 ttgtttactttctaaaattattttttgctttcattttctaaaatctatgttcatttccagtcacgaatatggagatgaaagacttgtgtagtaaataatt 23353558  T
Q  177 gtgctatattagaa 190  Q
    ||||| | ||||||    
T  23353559 gtgctgttttagaa 23353572  T

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Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 229
Target Start/End: Original strand, 23441455 - 23441606
Alignment:
Q  78 tgtttactttctaaaaatatttttagctttcattttctaaaatttatgttcatttccaatcacgaatatggagatgaaaaacttgtgtagtaggaaattg 177  Q
    |||||| |||| |||| |||||||||  ||  |||||||||||||||||||||||||||| | |||||||||||||||| |||  |||||||   |  ||    
T  23441455 tgtttattttcaaaaattatttttagtgtttgttttctaaaatttatgttcatttccaattaagaatatggagatgaaagactcatgtagtaaatagctg 23441554  T
Q  178 tgctatattagaaaacaaaacttgcaaatcataggatatagtttattgattt 229  Q
    ||||||||||||||||||||| || |||| ||| || |||||||||| ||||    
T  23441555 tgctatattagaaaacaaaacatgtaaatgatatgaaatagtttatttattt 23441606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 229
Target Start/End: Original strand, 23473987 - 23474138
Alignment:
Q  78 tgtttactttctaaaaatatttttagctttcattttctaaaatttatgttcatttccaatcacgaatatggagatgaaaaacttgtgtagtaggaaattg 177  Q
    |||||| |||| |||| |||||||||  ||  |||||||||||||||||||||||||||| | ||| |||||||||||| |||  |||||||   |  ||    
T  23473987 tgtttattttcaaaaattatttttagtgtttgttttctaaaatttatgttcatttccaattaagaaaatggagatgaaagactcatgtagtaaatagctg 23474086  T
Q  178 tgctatattagaaaacaaaacttgcaaatcataggatatagtttattgattt 229  Q
    ||||||||||||||||||||| || |||| ||| || |||||||||| ||||    
T  23474087 tgctatattagaaaacaaaacatgtaaatgatatgaaatagtttatttattt 23474138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 288
Target Start/End: Original strand, 23455668 - 23455782
Alignment:
Q  176 tgtgctatattagaaaacaaaacttgcaaatcataggatatagtttattga-tttacttagcattttttaaacttacaagtcatg-acatgtggaaagtt 273  Q
    ||||||||||||||| ||||||| ||||||| |||||| |||||||||||| ||||||| | |||||  |||| ||||||| ||| |||| |  |||| |    
T  23455668 tgtgctatattagaatacaaaacatgcaaatgataggaaatagtttattgattttactttgaattttggaaacatacaagtgatgaacatatccaaagct 23455767  T
Q  274 ggatagttcgtttta 288  Q
    |||||||| ||||||    
T  23455768 ggatagtttgtttta 23455782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 13805986 - 13806039
Alignment:
Q  76 cttgtttactttctaaaaatatttttagctttcattttctaaaatttatgttca 129  Q
    ||||||||||||||||||  ||||| |  |||||||||||||||||||||||||    
T  13805986 cttgtttactttctaaaagcattttcaattttcattttctaaaatttatgttca 13806039  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 45301949 - 45301895
Alignment:
Q  78 tgtttactttctaaaaatatttttagctttcattttctaaaatttatgttcattt 132  Q
    ||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||    
T  45301949 tgtttactttctaaaaacattttcagctttcattttccaaaatttatgttcattt 45301895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 11210948 - 11210996
Alignment:
Q  78 tgtttactttctaaaaatatttttagctttcattttctaaaatttatgt 126  Q
    |||||||||||| |||||||||| || ||| ||||||||||||||||||    
T  11210948 tgtttactttctcaaaatattttcagtttttattttctaaaatttatgt 11210996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 39425115 - 39425066
Alignment:
Q  73 gggcttgtttactttctaaaaatatttttagctttcattttctaaaattt 122  Q
    ||||||||||||||| |||||  ||||| || ||||||||||||||||||    
T  39425115 gggcttgtttactttttaaaatcattttcagttttcattttctaaaattt 39425066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 12979183 - 12979147
Alignment:
Q  96 atttttagctttcattttctaaaatttatgttcattt 132  Q
    ||||| || ||||||||||||||||||||||||||||    
T  12979183 attttcagttttcattttctaaaatttatgttcattt 12979147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 17511400 - 17511349
Alignment:
Q  80 tttactttctaaaaatatttttagctttcattttctaaaatttatgttcattt 132  Q
    |||||||||||| |||||||| || ||||||||| | ||||||||||||||||    
T  17511400 tttactttctaataatattttaagttttcatttt-ttaaatttatgttcattt 17511349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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