View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7951_low_6 (Length: 261)
Name: NF7951_low_6
Description: NF7951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7951_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 34683687 - 34683461
Alignment:
| Q |
18 |
gttacctacatctagtcctcgtgtttaatcatatgagattttcatccacaaaaattgaatctagatatataaagatgaaggagatagactcactaatgtg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34683687 |
gttacctacatctagtcctcgtgtttaatcatatgagattttcatccacaaaaattgaatctagatatataaagatggaggagatagactcactaatgtg |
34683588 |
T |
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| Q |
118 |
ggatgggaacaaggagctggagtgtactctttgccgaccctgccccgttgacatcccgtcagatctgagatattttgatggtggtgttgaatggcctcta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34683587 |
ggatgggaacaaggagctggagtgtactctttgccgaccctgccccgttgacatcccgtcagatctgagatattttgatggtggtgttgaatggcctcta |
34683488 |
T |
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| Q |
218 |
ggtgtaggaccttcctcggcaaccttc |
244 |
Q |
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| T |
34683487 |
ggtgtaggaccttcctcggcaaccttc |
34683461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 26981360 - 26981134
Alignment:
| Q |
18 |
gttacctacatctagtcctcgtgtttaatcatatgagattttcatccacaaaaattgaatctagatatataaagatgaaggagatagactcactaatgtg |
117 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26981360 |
gttacctacatctagtcctcttgtttaatcatatgagattttcatccacaaaaattgaatctagatatataaagatggaggagatagactcactaatgtg |
26981261 |
T |
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| Q |
118 |
ggatgggaacaaggagctggagtgtactctttgccgaccctgccccgttgacatcccgtcagatctgagatattttgatggtggtgttgaatggcctcta |
217 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| |
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| T |
26981260 |
ggatgggaacaaggagctggagtgtactttttgccgaccctgccccgttgacatctcctgtcatctgagatattttgatggtggtgttgaatggcctcta |
26981161 |
T |
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| Q |
218 |
ggtgtaggaccttcctcggcaaccttc |
244 |
Q |
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| T |
26981160 |
ggtgtaggaccttcgtcggcaatcttc |
26981134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 27082712 - 27082815
Alignment:
| Q |
28 |
tctagtcctcgtgtttaatcatatgagattttcatccacaaaaattgaatctagatatataaagatgaaggagatagactcactaatgtgggatgggaac |
127 |
Q |
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|||||||||| ||||||| ||| |||| |||| ||||| ||||| ||||||||||||||||||| | ||||| |||||| |||||||||||||||| |
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| T |
27082712 |
tctagtcctcatgtttaaccat--gagagtttcttccactaaaatggaatctagatatataaagacagggaagataaactcaccaatgtgggatgggaac |
27082809 |
T |
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| Q |
128 |
aaggag |
133 |
Q |
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|||||| |
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| T |
27082810 |
aaggag |
27082815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 30219727 - 30219683
Alignment:
| Q |
50 |
atgagattttcatccacaaaaattgaatctagatatataaagatg |
94 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
30219727 |
atgagattttcatcccctaaaattgaatctagatatataaagatg |
30219683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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