View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7951_low_8 (Length: 252)
Name: NF7951_low_8
Description: NF7951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7951_low_8 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 34683069 - 34683310
Alignment:
| Q |
11 |
gagatgaaaccaaagggaaaaacatggggattttagaaacttgaagttgtcagaagaacaaatgcaaaatatcgcaaccatttgagtctttatgaggctt |
110 |
Q |
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| T |
34683069 |
gagatgaaaccaaagggaaaaacatggggattttagaaacttgaagttgtcagaagaacaaatgcaaaatatcgcaaccatttgagtctttatgaggctt |
34683168 |
T |
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| Q |
111 |
tgatgacaatgacagtgtcgaaggcagtgtcatccaccgtaaatggaaagttcttgggcgaacaaaaaacgcccacaaatatggtagcattcagtttgct |
210 |
Q |
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| T |
34683169 |
tgatgacaatgacagtgtcgaaggcagtgtcatccaccgtaaatggaaagttcttgggcgaaccaaaaacgcccacaaatatggtagcattcagtttgct |
34683268 |
T |
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| Q |
211 |
caatgttcaacattaaagcttcgtagagtgagggtgaaagtt |
252 |
Q |
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| T |
34683269 |
caatgttcaacattaaagcttcgtagagtgagggtgaaagtt |
34683310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 26980687 - 26980882
Alignment:
| Q |
11 |
gagatgaaaccaaagggaaaaacatggggattttagaaacttgaagttgtcagaagaacaaatgcaaaatatcgcaaccatttgagtctttatgaggctt |
110 |
Q |
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| T |
26980687 |
gagatgaaaccaa-gggaaaaacatggggattttagaaacttgaagttgtcagaagaacaaatgcaaaatatcacaaccatttgagtctt-atgaggctt |
26980784 |
T |
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| Q |
111 |
tgatgac---aatgacagtgtcgaaggcagtgtcatccaccgtaaatggaaagttcttgggcgaacaaaaaacgcccacaaatatggtagcattcagt |
205 |
Q |
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| T |
26980785 |
tgatgacgacaatgacagtgtcgaaggcagtgtcatccaccgtaaatggaaagttattgggcgaaccaaaaacgcccacaaatatggtagcattcagt |
26980882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 41 - 249
Target Start/End: Complemental strand, 27084221 - 27084014
Alignment:
| Q |
41 |
ttttagaaacttgaagttgtcagaagaacaaatgcaaaatatcgcaaccatttgagtctttatgaggctttgatgacaatgacagtgtcgaaggcagtgt |
140 |
Q |
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| T |
27084221 |
ttttagaaaccagaagtcgtccgaagaagaaatggaaaatgtcgcaaccattcgagt-tttatgcggttttgatgacaatgatagtatagaaggcggtgt |
27084123 |
T |
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| Q |
141 |
catccaccgtaaatggaaagttcttgggcgaacaaaaaacgcccacaaatatggtagcattcagtttgctcaatgttcaacattaaagcttcgtagagtg |
240 |
Q |
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| T |
27084122 |
catgaaccgtaaatggaaacctcttgggcgaaccaacggcgcccacaattatggtctcattaagtttgttcaatgttcaacattaaagcttcctagagta |
27084023 |
T |
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| Q |
241 |
agggtgaaa |
249 |
Q |
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| T |
27084022 |
agggtgaaa |
27084014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 27022203 - 27022255
Alignment:
| Q |
200 |
ttcagtttgctcaatgttcaacattaaagcttcgtagagtgagggtgaaagtt |
252 |
Q |
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| T |
27022203 |
ttcagtttgttcaatgttcaacattaaagcttcctagagtgagggtcaaagtt |
27022255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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