View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7952_low_2 (Length: 342)
Name: NF7952_low_2
Description: NF7952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7952_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 47043372 - 47043528
Alignment:
| Q |
1 |
atacgtctccttttggctccctgaagatgtgtttcccataaaagagaaccgttaagcatcacattagacaaattttaccatggcgatccctatgaaatcg |
100 |
Q |
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| T |
47043372 |
atacgtctccttttggctccctgaagatgtgtttcccataaaagagaaccgttaagcatcacattagacaaattttaccatggccatccctatgaaatcg |
47043471 |
T |
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| Q |
101 |
acggtcacgttatcatagtaaaaatatgcattgataaaataaaaatgtaatcctgac |
157 |
Q |
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| T |
47043472 |
acggtcacgttatcatagtaaaaatatgcattgataaaataaaaatgtaatcctgac |
47043528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 187 - 332
Target Start/End: Original strand, 47043557 - 47043702
Alignment:
| Q |
187 |
aaagaataatcttctatttaaactgaaaataacattcataaatacaaaaaatagtcatcattataacaaattccaaaacctgagagttaaagttagagac |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47043557 |
aaagaataatcttctatttaaactgaaaataacattcataaatacaaaaaatagtcatcattataacaaattccaaaacctgagagttaaagttagagac |
47043656 |
T |
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| Q |
287 |
gtccaacttgcaactacaacaactacggtgtggctacttgatgatg |
332 |
Q |
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| T |
47043657 |
gtccaacttgcaactacaacaactacggtgtggctacttgatgatg |
47043702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 17902294 - 17902328
Alignment:
| Q |
187 |
aaagaataatcttctatttaaactgaaaataacat |
221 |
Q |
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| T |
17902294 |
aaagaataatcttctatttaaattgaaaataacat |
17902328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 1112500 - 1112536
Alignment:
| Q |
187 |
aaagaataatcttctatttaaactgaaaataacattc |
223 |
Q |
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| T |
1112500 |
aaagattaatcttctatttaaattgaaaataacattc |
1112536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 23688387 - 23688420
Alignment:
| Q |
187 |
aaagaataatcttctatttaaactgaaaataaca |
220 |
Q |
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| T |
23688387 |
aaagaataatcttctatttaaattgaaaataaca |
23688420 |
T |
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