View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7953_low_1 (Length: 566)
Name: NF7953_low_1
Description: NF7953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7953_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 14 - 553
Target Start/End: Original strand, 39426329 - 39426874
Alignment:
| Q |
14 |
caagattaacatgattaaacgtgtttttaataaactaggcagatcaggtaattaaagatatcaacaacattcgaaagacacagttgaaatgaaattgttc |
113 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39426329 |
caagattaacatgattaaacatgtttttaataaactaggcagatcaggtaattaaagatatcaacaacattcgaaagacacggttgaaatgaaattgttc |
39426428 |
T |
|
| Q |
114 |
taaaatttaatgnnnnnnnntt------accgaattctgtttcttcatcaaatagttctattaaagcatcatattgtttctctcttaactcaggccgctt |
207 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39426429 |
taaaatttaatgaaatttttttttttttaccgaattctgtttcttcatcaaatggttctattaaagcatcatattgtttctctcttaactcaggccgctc |
39426528 |
T |
|
| Q |
208 |
cagctgtccatcaaattcacttggctttgactcaagaccctccatgtgtccctcaaactgcttctcttttggcttgagctccttctcgtgtactttgaac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39426529 |
cagctgtccatcaaattcacttggctttgactcaagaccctccatgcgtccctcaaactgcttctcttttggcttgagctccttctcgtgtactttgaag |
39426628 |
T |
|
| Q |
308 |
ttcttgtcttctgattcagtctctttccccagtccttcaaattgtatttcttctgaataaaaatcctccatttggcttgcaaaacgcttgagtgcctgca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39426629 |
ttcttgtcttctgattcagtctctttcccctgtccttcaaattgtatttcttctgaataaaaatcctccatttggcttgcaaaacgcttgagttcctgca |
39426728 |
T |
|
| Q |
408 |
ttcgagctttgagtttctcctctctggacttgagttcctttcctcggtcttcatattcctcctttattgattgaacctccttcatttggcccacaagtaa |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
39426729 |
ttcgagctttgagtttctcctctctggacttaagttcctttcctcggtcttcatattcctcctttattgattgaatctccttcatttggccctcaagtaa |
39426828 |
T |
|
| Q |
508 |
cttttcttttgactggagctccttcaattgtccttcaaattgcttc |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39426829 |
cttttcttttgactggagctccttcaattgtccttcaaattgcttc |
39426874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 18 - 555
Target Start/End: Complemental strand, 39130925 - 39130385
Alignment:
| Q |
18 |
attaacatgattaaacgtgtttttaataaactaggcagatcaggtaattaaagatatcaacaacattcgaaagacacagttgaaatgaaattgtt-ctaa |
116 |
Q |
| |
|
||||| ||||||||| ||| ||||| ||| |||| ||||| |||||||||| || ||||||||||| |||||| | ||||||||||||||||| | || |
|
|
| T |
39130925 |
attaaaatgattaaagatgtctttaaaaaattaggtagatctggtaattaaaaatgtcaacaacatt-gaaagaaatggttgaaatgaaattgtttccaa |
39130827 |
T |
|
| Q |
117 |
aatttaatgnnnnnnnn---ttaccgaattctgtttcttcatcaaatagttctattaaagcatcatattgtttctctcttaactcaggccgcttcagctg |
213 |
Q |
| |
|
|| | |||| ||||| ||||||||||||| || ||| |||||||||||| ||||||||||||||||||||| |||||||||||| | | |
|
|
| T |
39130826 |
aactaaatgaaaaagaacatttacccaattctgtttcttgatggaatggttctattaaagaatcatattgtttctctcttaagtcaggccgcttcggttt |
39130727 |
T |
|
| Q |
214 |
tccatcaaattcacttggctttgactcaagaccctccatgtgtccctcaaactgcttctcttttggcttgagctccttctcgtgtactttgaacttcttg |
313 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| || |||| ||||||||||||||||||||||||||| || |||||| ||||||||||| |||||| |
|
|
| T |
39130726 |
tccatgaaatttacttggctttgactcaagactcttcatgcatccctcaaactgcttctcttttggcttaagatccttcaaatgtactttgaatttcttg |
39130627 |
T |
|
| Q |
314 |
tcttctgattcagtctctttccccagtccttcaaattgtatttcttctgaataaaaatcctccatttggcttgcaaaacgcttgagtgcctgcattcgag |
413 |
Q |
| |
|
|||||||| || | ||||||||| ||||| |||||||| | |||||||||| ||| | |||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
39130626 |
tcttctgactctggctctttccctcgtcctgcaaattgtttctcttctgaattgaaaccatccatttggcttacaaaacgcttgagctcctgcattcgag |
39130527 |
T |
|
| Q |
414 |
ctttgagtttctcctctctggacttgagttcctttcctcggtcttcatattcctcctttattgattgaacctccttcatttggcccacaagtaacttttc |
513 |
Q |
| |
|
||||| || ||||||| |||| | |||||||| ||||||||||| |||||| || ||||||||||| |||||||| |||| | |||| ||||||| |
|
|
| T |
39130526 |
ttttgaattcctcctctttggattcatgttcctttactcggtcttcaaattccttctctattgattgaatctccttcacttggtcttcaagcaacttttg |
39130427 |
T |
|
| Q |
514 |
ttttgactggagctccttcaattgtccttcaaattgcttctt |
555 |
Q |
| |
|
||||||||||| |||||||||| ||||||| |||| |||||| |
|
|
| T |
39130426 |
ttttgactggaactccttcaatcgtccttcgaatttcttctt |
39130385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 162 - 460
Target Start/End: Original strand, 39494362 - 39494660
Alignment:
| Q |
162 |
gttctattaaagcatcatattgtttctctcttaactcaggccgcttcagctgtccatcaaattcacttggctttgactcaagaccctccatgtgtccctc |
261 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||| || |||| ||||||||| ||||| |||| |||| || |
|
|
| T |
39494362 |
gttctattaaagcatcatattttttctctcttaactcaggccgcttcagttttccatcaaatttacatggcattgactcaaaacccttcatgcgtccgtc |
39494461 |
T |
|
| Q |
262 |
aaactgcttctcttttggcttgagctccttctcgtgtactttgaacttcttgtcttctgattcagtctctttccccagtccttcaaattgtatttcttct |
361 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||| ||| || | ||||||||| |||||||||||||| | ||||| |
|
|
| T |
39494462 |
aaactgcttctcttttggcttcagctccttcacgtgtgctttgaacttcttgtcttttgactctggctctttccctcgtccttcaaattgtttctcttcc |
39494561 |
T |
|
| Q |
362 |
gaataaaaatcctccatttggcttgcaaaacgcttgagtgcctgcattcgagctttgagtttctcctctctggacttgagttcctttcctcggtcttca |
460 |
Q |
| |
|
|| | |||||||||||||||||| |||||| |||||| ||||||||||||||||| || ||||||| |||| | | ||||||| ||||||||||| |
|
|
| T |
39494562 |
gatttgaaatcctccatttggcttacaaaacccttgagattctgcattcgagctttgaattcctcctctttggattcaaattcctttactcggtcttca |
39494660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 260 - 409
Target Start/End: Complemental strand, 39124706 - 39124557
Alignment:
| Q |
260 |
tcaaactgcttctcttttggcttgagctccttctcgtgtactttgaacttcttgtcttctgattcagtctctttccccagtccttcaaattgtatttctt |
359 |
Q |
| |
|
||||||||||||||| |||||| |||||||| | ||||||||||||| ||| |||||||| || |||||||| ||||||| |||||| | | || |
|
|
| T |
39124706 |
tcaaactgcttctctattggctcaagctccttagcatgtactttgaactccttctcttctgactcgagctctttccatcgtccttctaattgtttctgtt |
39124607 |
T |
|
| Q |
360 |
ctgaataaaaatcctccatttggcttgcaaaacgcttgagtgcctgcatt |
409 |
Q |
| |
|
|||| | ||||| ||||||||||||| |||||||||| || |||||||| |
|
|
| T |
39124606 |
ctgatttaaaattctccatttggcttacaaaacgcttcaggtcctgcatt |
39124557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 39124776 - 39124729
Alignment:
| Q |
148 |
ttcttcatcaaatagttctattaaagcatcatattgtttctctcttaa |
195 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
39124776 |
ttcttcatcggatggttctattaaagcatcatattgtttctctcttaa |
39124729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 182 - 308
Target Start/End: Complemental strand, 16113402 - 16113276
Alignment:
| Q |
182 |
tgtttctctcttaactcaggccgcttcagctgtccatcaaattcacttggctttgactcaagaccctccatgtgtccctcaaactgcttctcttttggct |
281 |
Q |
| |
|
|||||| || ||||||||||| |||||| ||||| ||||||| | ||||||||||||| ||| | ||| | |||| ||||||||||||| || |
|
|
| T |
16113402 |
tgtttccctgttaactcaggctccttcagttgtccgccaaattcgttcagctttgactcaagctccttgacttgtacttcaatctgcttctcttttaact |
16113303 |
T |
|
| Q |
282 |
tgagctccttctcgtgtactttgaact |
308 |
Q |
| |
|
||||||||||||| | ||||||||||| |
|
|
| T |
16113302 |
tgagctccttctcctttactttgaact |
16113276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University