View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7953_low_2 (Length: 516)
Name: NF7953_low_2
Description: NF7953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7953_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 14 - 365
Target Start/End: Original strand, 53120776 - 53121135
Alignment:
| Q |
14 |
catcaaataatgtgttatcacatcgtacagtttagcatatggttactaagacattgatatgaggggttagattcggtcttcaaattctacacnnnnnnnc |
113 |
Q |
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| T |
53120776 |
catcaaataatgtgttatcacatcatacaatttagcatgtagttactaagacattgatatgaggggttaggttcggtcttcaaattctacattttttctc |
53120875 |
T |
|
| Q |
114 |
gacatttaaggtgtgtgagccactaaattaattnnnnnnngtaatgaattaaaaataatgacttggcataccttattgaattcatgttaaactcctaaac |
213 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53120876 |
gacacttaaggtgtgtgagccactaaattaattaaaaaaagtaatgaattaaaaataatgacttggcataccttattgaattcatgttaaactcctaaac |
53120975 |
T |
|
| Q |
214 |
aaaattgcat-nnnnnnnnnnnnnnnnnnnntacatatccgtagaatcaattaaatatat----ccgtag--ggtaagggtttgttttggggaaaagatt |
306 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||| |||| ||||||||||||||||||| ||||||| |
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| T |
53120976 |
aaaattgcataaaaaaaaaaactcaaaaaaatacatatccatagaatcaattaaatatatgttgatgtaggtggtaagggtttgttttgggaaaaagatc |
53121075 |
T |
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| Q |
307 |
ggtaaacaccctttaaa-ggtgtacctcctatacacacgccgacatggcacatttctaat |
365 |
Q |
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| T |
53121076 |
ggtaaacaccctttaaagggtgtacctcctatacacacgctgacatggcacatttctaat |
53121135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 30951798 - 30951868
Alignment:
| Q |
296 |
gggaaaagattggtaaacaccctttaaa-ggtgtacctcctatacacacgccgacatggcacatttctaat |
365 |
Q |
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| T |
30951798 |
gggaaaagattggtaaacaccctttaaagggtgtacctcccatacacacgctgacatgacacatttctaat |
30951868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 33806336 - 33806266
Alignment:
| Q |
296 |
gggaaaagattggtaaacaccctttaaagg-tgtacctcctatacacacgccgacatggcacatttctaat |
365 |
Q |
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|||||||||||||||||||||||||||||| || || ||| |||||||||| |||||| | |||||||||| |
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| T |
33806336 |
gggaaaagattggtaaacaccctttaaaggatgcacgtcccatacacacgctgacatgacgcatttctaat |
33806266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 26467352 - 26467398
Alignment:
| Q |
296 |
gggaaaagattggtaaacaccctttaaa-ggtgtacctcctatacac |
341 |
Q |
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| T |
26467352 |
gggaaaagattggtaaacaccctttaaagggtgtacctcccatacac |
26467398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 19192130 - 19192169
Alignment:
| Q |
296 |
gggaaaagattggtaaacaccctttaaa-ggtgtacctcc |
334 |
Q |
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| T |
19192130 |
gggaaaagattggtaaacaccctttaaagggtgtacctcc |
19192169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 355
Target Start/End: Complemental strand, 959456 - 959412
Alignment:
| Q |
312 |
acaccctttaaagg-tgtacctcctatacacacgccgacatggca |
355 |
Q |
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| T |
959456 |
acaccctttaaagggtgtaccttctatacacacgctgacatggca |
959412 |
T |
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