View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7953_low_6 (Length: 211)
Name: NF7953_low_6
Description: NF7953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7953_low_6 |
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| [»] scaffold0716 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 7314295 - 7314476
Alignment:
| Q |
20 |
tgggaactgctttgatcgaagcttctttgagcgttgtggtttcagcagaacaaacaacaacacaatcagacttaccgatggtacaacagtagtcttaaga |
119 |
Q |
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| T |
7314295 |
tgggatctgctttgatccaagcttctctaagcgttgtggtttcagcagaacaaacaacaacacaatgggacttaccgatggtacaacagtagtcttacga |
7314394 |
T |
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| Q |
120 |
tgtggaattttgaaaggaggaagaaacagcaacccatcggcgagatggattgataactcacaggctgaagagatctttcatc |
201 |
Q |
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| T |
7314395 |
tgtggaattttgaaaggaggaagaaacagcaacccatcggcgagatggattgataactcacaggctgaagagatctttcatc |
7314476 |
T |
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Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 25 - 199
Target Start/End: Original strand, 11136855 - 11137030
Alignment:
| Q |
25 |
actgctttgatcgaagcttctttgagcgttgtggtttcagcagaacaaacaacaacacaatcagacttaccgatggtacaacagtagtcttaagatgtgg |
124 |
Q |
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| T |
11136855 |
actgctttgatcgaagcttctttgagcgttgtggtttcagcagaacaaacaacaacacaatcggacttaccgattgtacaacagtagtcttacgatgtgg |
11136954 |
T |
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| Q |
125 |
aattttgaaaggaggaag-aaacagcaacccatcggcgagatggattgataactcacaggctgaagagatctttca |
199 |
Q |
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| T |
11136955 |
aattttgaaaggaggaagaaaacagcaactcatcggcgagatggattgataactcacaggttgaaaagatctttca |
11137030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 8650562 - 8650380
Alignment:
| Q |
20 |
tgggaactgctttgatcgaagcttctttgagcgttgtggtttcagcagaacaaacaacaacacaatcagacttaccgatggtacaacagtagtcttaaga |
119 |
Q |
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| T |
8650562 |
tgggacctgctttgatcgaagcttctttgagcgttgtggtttcaggagaacaaacaacaacacaatcggacttaccgattgtacaacaatagtcttacga |
8650463 |
T |
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| Q |
120 |
tgtggaattttgaaaggaggaag-aaacagcaacccatcggcgagatggattgataactcacaggctgaagagatctttcatc |
201 |
Q |
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| T |
8650462 |
tgtggaattttgaaaggaggaagaaaacagcaactcatcggcgagatggattgataactcacaagctgaagagatctttcatc |
8650380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0716 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0716
Description:
Target: scaffold0716; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 2503 - 2436
Alignment:
| Q |
18 |
catgggaactgctttgatcgaagctt-ctttgagcgttgtggtttcagcagaacaaacaacaacacaa |
84 |
Q |
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| T |
2503 |
catgggacctactttgatcgaaactttctttgagcgttgtggtttcagcagaacaaacaacaacacaa |
2436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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