View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7954_high_1 (Length: 455)
Name: NF7954_high_1
Description: NF7954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7954_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 12 - 438
Target Start/End: Original strand, 29441917 - 29442346
Alignment:
| Q |
12 |
agcagagatgccaactgagggaccaacttggaattcccactacattnnnnnnnncaatagattaaacatataaaatcaacaagcatatgtttaatttaat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29441917 |
agcagagatgccaactgagggaccaacttggaattcccactacattaaaaaaaacaatagattaaacttataaaatcaacaagcatatgtttaatttaaa |
29442016 |
T |
|
| Q |
112 |
tgnnnnnnngtgtagtaaataa---taatgctaaagggtaaaataagtgcataggttgctctaacttacttgaccaggcatcacttcaccattgattcca |
208 |
Q |
| |
|
|| |||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29442017 |
tgaaaaaaagtgtagcaaataatagtaatgataaagggtaaaataagtgcataggttgctctaacttacttgaccaggcatcacttcaccattgattcca |
29442116 |
T |
|
| Q |
209 |
ctgatgttgatgccggcataaagacaggctttgtaatgtgagtcaacaatgtcacggccaaatgccttgtcagcaccagcaccacaatagtatggtccct |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29442117 |
ctgatgttgatgccggcataaagacaggctttgtaatgtgagtcaacaatgtcacggccaaatgccttgtcagcaccagcaccacaatagtatggtccct |
29442216 |
T |
|
| Q |
309 |
attgagcaaattataaaataataacaatgttattaactgataaaattagaacagatgtaaccaatgacaataaaaaattcaccaaaagaagttcaaattg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29442217 |
attgagcaaattataaaataataacaatgttattaactgataaaattagaacagatgtaaccaatgacaataaaaaattcaccaaaagaagttcaaattg |
29442316 |
T |
|
| Q |
409 |
ggaatcttttattcaaaataacataaaact |
438 |
Q |
| |
|
|||||||| |||||||||||||||||||| |
|
|
| T |
29442317 |
ggaatcttggattcaaaataacataaaact |
29442346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 184 - 318
Target Start/End: Original strand, 33277569 - 33277703
Alignment:
| Q |
184 |
aggcatcacttcaccattgattccactgatgttgatgccggcataaagacaggctttgtaatgtgagtcaacaatgtcacggccaaatgccttgtcagca |
283 |
Q |
| |
|
|||||| ||||| ||||| | ||||||||||| ||||| |||||||| || ||||||||||||| |||||||| ||||| || |||||||| |||||| |
|
|
| T |
33277569 |
aggcataacttctccattaacaccactgatgttaatgccagcataaaggcatgctttgtaatgtgcatcaacaatatcacgccctaatgccttttcagca |
33277668 |
T |
|
| Q |
284 |
ccagcaccacaatagtatggtccctattgagcaaa |
318 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||| |
|
|
| T |
33277669 |
ccaacaccacaatagtatggtccctattcagcaaa |
33277703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 179 - 308
Target Start/End: Original strand, 26249205 - 26249334
Alignment:
| Q |
179 |
tgaccaggcatcacttcaccattgattccactgatgttgatgccggcataaagacaggctttgtaatgtgagtcaacaatgtcacggccaaatgccttgt |
278 |
Q |
| |
|
||||||||||| || || |||||||| ||||| ||||| ||||| ||||||||||| ||||||||||||| |||||||||||||| ||| | || || | |
|
|
| T |
26249205 |
tgaccaggcataacctctccattgatgccactaatgttaatgccagcataaagacaagctttgtaatgtgcatcaacaatgtcacgaccataggctttat |
26249304 |
T |
|
| Q |
279 |
cagcaccagcaccacaatagtatggtccct |
308 |
Q |
| |
|
|||||||| |||||||| ||||| |||| |
|
|
| T |
26249305 |
cagcaccaatcccacaataatatgggccct |
26249334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University