View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7954_high_4 (Length: 251)
Name: NF7954_high_4
Description: NF7954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7954_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 32431946 - 32431712
Alignment:
| Q |
18 |
ggtttttatattttagaaaatatcttctcataacaaaaattcatcatatc-----------gagaatcaaggataataaaagataattgtatgtaaaata |
106 |
Q |
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| T |
32431946 |
ggtttttatattttagaaaatatcgtctcataacaaaaattcatcatatcattcaagaggggagaatcaaagataataagagatgattgtatgtaaaata |
32431847 |
T |
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| Q |
107 |
acaggtccacaaagggcctatcaagacaatctttccttaaaatgattattactcaaatttttaataatgcatgtgtcaacggtcaacatcgtatctttcc |
206 |
Q |
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| T |
32431846 |
acatgtcaaaaaagggcctatcaagacaatctttccttaaaatgattattactcaaatttttaacaatgcatgtgtcaacggtcaacatcgtatctttcc |
32431747 |
T |
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| Q |
207 |
atctgtgtctacaccacacctacttgttcatctca |
241 |
Q |
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| T |
32431746 |
atctgtgtctacaccacatctacttgttcctctca |
32431712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 42881146 - 42881180
Alignment:
| Q |
22 |
tttatattttagaaaatatcttctcataacaaaaa |
56 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
42881146 |
tttatattttagaaaatatcttctcataagaaaaa |
42881180 |
T |
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