View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7954_high_5 (Length: 249)

Name: NF7954_high_5
Description: NF7954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7954_high_5
NF7954_high_5
[»] chr1 (4 HSPs)
chr1 (2-174)||(52871368-52871528)
chr1 (111-165)||(28234178-28234232)
chr1 (1-30)||(26711346-26711375)
chr1 (1-30)||(33498282-33498311)
[»] chr2 (3 HSPs)
chr2 (79-172)||(10137119-10137212)
chr2 (1-63)||(1519393-1519455)
chr2 (1-62)||(26694386-26694448)
[»] chr8 (1 HSPs)
chr8 (1-63)||(41043723-41043785)
[»] chr7 (3 HSPs)
chr7 (1-63)||(42167474-42167536)
chr7 (1-63)||(25494092-25494153)
chr7 (1-63)||(44655843-44655904)
[»] chr6 (2 HSPs)
chr6 (1-63)||(26680814-26680876)
chr6 (109-172)||(30861063-30861126)
[»] chr5 (1 HSPs)
chr5 (1-49)||(1536415-1536463)
[»] chr3 (3 HSPs)
chr3 (81-174)||(53150471-53150564)
chr3 (1-49)||(13991853-13991901)
chr3 (80-174)||(25558911-25559006)
[»] scaffold0169 (1 HSPs)
scaffold0169 (1-63)||(11202-11264)
[»] scaffold0121 (1 HSPs)
scaffold0121 (1-63)||(11270-11332)
[»] scaffold1317 (1 HSPs)
scaffold1317 (1-63)||(1884-1945)
[»] chr4 (3 HSPs)
chr4 (2-50)||(28144175-28144223)
chr4 (111-174)||(42170336-42170399)
chr4 (110-172)||(53290404-53290466)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-30)||(350855-350884)


Alignment Details
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 174
Target Start/End: Complemental strand, 52871528 - 52871368
Alignment:
Q  2 aaaattaaaacttatttacataaaaaa---tagattaagaagaattgcatatttcaattggtaagaagaagaataagattaacagaaatgataattgaac 98  Q
    |||||||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||                 ||||||||||||||||||    
T  52871528 aaaattaaaacttatttacataaaaaaaaatagattaagaagaattgcatatctcaattggtaagct---------------cagaaatgataattgaac 52871444  T
Q  99 acannnnnnnaaacacaatacaaacaccatgggtatttatgtcatttcaactttaattggaagtgcaattttgtca 174  Q
    |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52871443 acatttttttaaacacaatacaaacaccatgggtatttatgtcatttcaactttaattggaagtgcaattttgtca 52871368  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 28234178 - 28234232
Alignment:
Q  111 acacaatacaaacaccatgggtatttatgtcatttcaactttaattggaagtgca 165  Q
    |||||||| | |||||||||||| || |||||||||||||||| || ||||||||    
T  28234178 acacaataaagacaccatgggtaattgtgtcatttcaactttagttagaagtgca 28234232  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 26711346 - 26711375
Alignment:
Q  1 caaaattaaaacttatttacataaaaaata 30  Q
    ||||||||||||||||||||||||||||||    
T  26711346 caaaattaaaacttatttacataaaaaata 26711375  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 33498282 - 33498311
Alignment:
Q  1 caaaattaaaacttatttacataaaaaata 30  Q
    ||||||||||||||||||||||||||||||    
T  33498282 caaaattaaaacttatttacataaaaaata 33498311  T

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Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 79 - 172
Target Start/End: Complemental strand, 10137212 - 10137119
Alignment:
Q  79 aacagaaatgataattgaacacannnnnnnaaacacaatacaaacaccatgggtatttatgtcatttcaactttaattggaagtgcaattttgt 172  Q
    |||||||||||||| ||||||||       |||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  10137212 aacagaaatgataactgaacacatttttttaaacacaatacagacatcatgggtaattatgtcatttcaactttaattggaagtgcaattttgt 10137119  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 1519455 - 1519393
Alignment:
Q  1 caaaattaaaacttatttacataaaaaatagattaagaagaattgcatatttcaattggtaag 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||    
T  1519455 caaaattaaaacttatttacataaaaaatagattaagaagaattgcatacctcagttggtaag 1519393  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 26694448 - 26694386
Alignment:
Q  1 caaaattaaaacttatttacataaaaaa-tagattaagaagaattgcatatttcaattggtaa 62  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||  ||| |||||||    
T  26694448 caaaattaaaacttatttacataaaaaaatagattaagaagaattgcatacctcagttggtaa 26694386  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 41043785 - 41043723
Alignment:
Q  1 caaaattaaaacttatttacataaaaaatagattaagaagaattgcatatttcaattggtaag 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||    
T  41043785 caaaattaaaacttatttacataaaaaatagattaagaagaattgcatacctcagttggtaag 41043723  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 42167474 - 42167536
Alignment:
Q  1 caaaattaaaacttatttacataaaaaatagattaagaagaattgcatatttcaattggtaag 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||    
T  42167474 caaaattaaaacttatttacataaaaaatagattaagaagaattgcatacctcagttggtaag 42167536  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 25494153 - 25494092
Alignment:
Q  1 caaaattaaaacttatttacataaaaaatagattaagaagaattgcatatttcaattggtaag 63  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||  ||| ||||||||    
T  25494153 caaaattgaaacttatttacataaaaaa-agattaagaagaattgcatacctcagttggtaag 25494092  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 44655904 - 44655843
Alignment:
Q  1 caaaattaaaacttatttacataaaaaatagattaagaagaattgcatatttcaattggtaag 63  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||  ||| ||||||||    
T  44655904 caaaattaaaactt-tttacataaaaaatagattaagaagaattgtatacctcagttggtaag 44655843  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 26680876 - 26680814
Alignment:
Q  1 caaaattaaaacttatttacataaaaaatagattaagaagaattgcatatttcaattggtaag 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||    
T  26680876 caaaattaaaacttatttacataaaaaatagattaagaagaattgcatacctcagttggtaag 26680814  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 30861126 - 30861063
Alignment:
Q  109 aaacacaatacaaacaccatgggtatttatgtcatttcaactttaattggaagtgcaattttgt 172  Q
    |||||||||||| |||| ||||||| ||||||||||||||||||||||| ||||||||||||||    
T  30861126 aaacacaatacagacactatgggtaattatgtcatttcaactttaattgaaagtgcaattttgt 30861063  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 1536415 - 1536463
Alignment:
Q  1 caaaattaaaacttatttacataaaaaatagattaagaagaattgcata 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1536415 caaaattaaaacttatttacataaaaaatagattaagaagaattgcata 1536463  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 174
Target Start/End: Complemental strand, 53150564 - 53150471
Alignment:
Q  81 cagaaatgataattgaacacannnnnnnaaacacaatacaaacaccatgggtatttatgtcatttcaactttaattggaagtgcaattttgtca 174  Q
    |||||||||||| ||||||||       |||||||||||| ||| |||||||| || || ||||||||||||||||||||||||||||||||||    
T  53150564 cagaaatgataactgaacacattttttcaaacacaatacagacatcatgggtaattgtgacatttcaactttaattggaagtgcaattttgtca 53150471  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13991853 - 13991901
Alignment:
Q  1 caaaattaaaacttatttacataaaaaatagattaagaagaattgcata 49  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13991853 caaaattaaaacttatttacataaaaaacagattaagaagaattgcata 13991901  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 25558911 - 25559006
Alignment:
Q  80 acagaaatgataattgaacacannnnnnnaaacacaatacaaacaccatgggtatttatgtcatttcaacttt-aattggaagtgcaattttgtca 174  Q
    ||||||||||||| ||||||||       |||||||||||| | | |||||||| || ||||||||||||||| ||||||||||||||||||||||    
T  25558911 acagaaatgataactgaacacattttttcaaacacaatacagatatcatgggtaattgtgtcatttcaacttttaattggaagtgcaattttgtca 25559006  T

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Target: scaffold0169 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 11264 - 11202
Alignment:
Q  1 caaaattaaaacttatttacataaaaaatagattaagaagaattgcatatttcaattggtaag 63  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||  ||| ||||||||    
T  11264 caaaattaaaacttatttgcataaaaaatagattaagaagaattgcatacatcagttggtaag 11202  T

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Target: scaffold0121 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 11270 - 11332
Alignment:
Q  1 caaaattaaaacttatttacataaaaaatagattaagaagaattgcatatttcaattggtaag 63  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||  ||| ||||||||    
T  11270 caaaactaaaacttaattacataaaaaatagattaagaagaattgcatacctcagttggtaag 11332  T

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Target: scaffold1317 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1317
Description:

Target: scaffold1317; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 1884 - 1945
Alignment:
Q  1 caaaattaaaacttatttacataaaaaatagattaagaagaattgcatatttcaattggtaag 63  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||  ||| ||||||||    
T  1884 caaaattgaaacttatttacataaaaaa-agattaagaagaattgcatacctcagttggtaag 1945  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 28144223 - 28144175
Alignment:
Q  2 aaaattaaaacttatttacataaaaaatagattaagaagaattgcatat 50  Q
    |||||| ||| |||||||  |||||||||||||||||||||||||||||    
T  28144223 aaaatttaaatttatttaattaaaaaatagattaagaagaattgcatat 28144175  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 42170399 - 42170336
Alignment:
Q  111 acacaatacaaacaccatgggtatttatgtcatttcaactttaattggaagtgcaattttgtca 174  Q
    |||||||||| ||| || ||||| | || ||||||||||||||||  |||||||||||||||||    
T  42170399 acacaatacatacatcaagggtaatcatatcatttcaactttaatcagaagtgcaattttgtca 42170336  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 53290404 - 53290466
Alignment:
Q  110 aacacaatacaaacaccatgggtatttatgtcatttcaactttaattggaagtgcaattttgt 172  Q
    ||||||||||| ||| || || || |||||| |||||||||||||||||| ||||||| ||||    
T  53290404 aacacaatacatacatcagggataattatgtaatttcaactttaattggatgtgcaatgttgt 53290466  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 350855 - 350884
Alignment:
Q  1 caaaattaaaacttatttacataaaaaata 30  Q
    ||||||||||||||||||||||||||||||    
T  350855 caaaattaaaacttatttacataaaaaata 350884  T

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