View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7954_low_2 (Length: 393)

Name: NF7954_low_2
Description: NF7954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7954_low_2
NF7954_low_2
[»] chr4 (2 HSPs)
chr4 (16-322)||(33151905-33152214)
chr4 (351-388)||(33152212-33152249)
[»] chr2 (18 HSPs)
chr2 (16-359)||(2362444-2362787)
chr2 (146-340)||(39493532-39493729)
chr2 (146-360)||(39604208-39604425)
chr2 (146-334)||(39144488-39144679)
chr2 (147-362)||(39216550-39216768)
chr2 (44-362)||(39396723-39397041)
chr2 (30-84)||(39604119-39604173)
chr2 (146-362)||(39196581-39196800)
chr2 (45-359)||(39421257-39421571)
chr2 (30-84)||(39099390-39099444)
chr2 (149-340)||(39188847-39189041)
chr2 (149-290)||(39099482-39099626)
chr2 (33-84)||(39138452-39138503)
chr2 (146-362)||(39138538-39138754)
chr2 (44-138)||(39131134-39131228)
chr2 (250-332)||(39126485-39126567)
chr2 (146-200)||(39223606-39223660)
chr2 (48-84)||(39152880-39152916)
[»] chr3 (1 HSPs)
chr3 (20-361)||(51575757-51576095)
[»] chr5 (1 HSPs)
chr5 (65-340)||(33562103-33562378)
[»] chr7 (1 HSPs)
chr7 (44-84)||(19808312-19808352)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 33151905 - 33152214
Alignment:
Q  16 caattacatcttttacagatgatcaaccaagtcctaccattgatggaagaagtttgcagttgctcccaattgagcaaattgatgaacttgagtcacgtgg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33151905 caattacatcttttacagatgatcaaccaagtcctaccattgatggaagaagtttgcagttgctcccaattgagcaaattgatgaacttgagtcacgtgg 33152004  T
Q  116 caatgacattctagctaatctgctagcatc---atcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaaagga 212  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  33152005 caatgacattctagctaatctgctagcatcatcatcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaaggga 33152104  T
Q  213 gacaatgctgcaattattgatgatttccacattgatttgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgcaatga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33152105 gacaatgctgcaattattgatgatttccacattgatttgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgcaatga 33152204  T
Q  313 gtctagcact 322  Q
     |||||||||    
T  33152205 atctagcact 33152214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 388
Target Start/End: Original strand, 33152212 - 33152249
Alignment:
Q  351 actgaaaattctgtccaggttctgggttctctgctact 388  Q
    |||||||||||||||||||||||||||| |||||||||    
T  33152212 actgaaaattctgtccaggttctgggttttctgctact 33152249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 359
Target Start/End: Original strand, 2362444 - 2362787
Alignment:
Q  16 caattacatcttttacagatgatcaaccaagtcctaccattgatggaagaagtttgcagttgctcccaattgagcaaattgatgaacttgagtcacgtgg 115  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||    
T  2362444 caatttcatctttcacagatgatcaaccaagtcctaccattgatggaagaagtttgcagtttctcccaattgaggaaattgatgaacttgagtcacatgg 2362543  T
Q  116 caatgacattctagctaatctgctagcatcatcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaaaggagac 215  Q
    ||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||  |||||| |||||     
T  2362544 caacgacagtctagctaatctgctagcatcatcatcagatccatcaaaagatgttttagatataatccagaaccccatcattccacagtgtaagggagaa 2362643  T
Q  216 aatgctgcaattattgatgatttccacattgatttgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgcaatgagtc 315  Q
    |||| || |||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||  |    
T  2362644 aatgttgtaattattgatgatcaccacattgatctgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcgagaagaagcaatgaagc 2362743  T
Q  316 tagcacttaatttgaaagcttacattggggaaaatactgaaaat 359  Q
    ||||||||||  |||||||||||||||| |||||||||||||||    
T  2362744 tagcacttaaactgaaagcttacattggcgaaaatactgaaaat 2362787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 146 - 340
Target Start/End: Complemental strand, 39493729 - 39493532
Alignment:
Q  146 atcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaa---aggagacaatgctgcaattattgatgatttccac 242  Q
    |||||||||||||||||||  |||||||||||| || ||||||||||| |||  |  ||||||   ||||||| ||||||||||||||||||||  ||||    
T  39493729 atcatcagatccatcaaaagttgttttggatataatacagaaccccattattaaaaagtgtaagataggagacgatgctgcaattattgatgatagccac 39493630  T
Q  243 attgatttgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgcaatgagtctagcacttaatttgaaagcttacat 340  Q
    |||  | |||||||| |||||| || |||||||||| || ||| |||||||||  ||||||| |||||||  ||||||||| || |||||||| ||||    
T  39493629 attcttctgctcgaagaactgaggaaaatctcaccagatattagacctcatgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacat 39493532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 146 - 360
Target Start/End: Original strand, 39604208 - 39604425
Alignment:
Q  146 atcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaaa---ggagacaatgctgcaattattgatgatttccac 242  Q
    |||||||||||||||||||  |||||||||||| || ||||| ||||| |||| |  || |||    ||||||||||||| |||||||||||||    ||    
T  39604208 atcatcagatccatcaaaagttgttttggatataatacagaatcccattattcaaaagtataagatgggagacaatgctgtaattattgatgatagagac 39604307  T
Q  243 attgatttgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgcaatgagtctagcacttaatttgaaagcttacattg 342  Q
    |||  | ||||| |||||||||||||||||  ||||||| ||||||||| |||   |||||| |||||||  |||||||||||||||||| || ||||      
T  39604308 attcttctgctcaaacaactgatgagaatcaaaccacatattaaacctcgtgtaagagaagaagcaatgaagctagcacttaatttgaaatctaacataa 39604407  T
Q  343 gggaaaatactgaaaatt 360  Q
    | |||||||| |||||||    
T  39604408 gtgaaaataccgaaaatt 39604425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 146 - 334
Target Start/End: Original strand, 39144488 - 39144679
Alignment:
Q  146 atcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaa---aggagacaatgctgcaattattgatgatttccac 242  Q
    |||||||||||||||||||  |||||||||||| || |||||||| || |||  |  ||||||   ||||||| |||||| |||||||||||||  ||||    
T  39144488 atcatcagatccatcaaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatgctgtaattattgatgatagccac 39144587  T
Q  243 attgatttgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgcaatgagtctagcacttaatttgaaagc 334  Q
    |||  | ||||| |  |||||| || |||||||| | || |||||||||||||  ||||||| |||||||  ||||||||| ||||||||||    
T  39144588 attcttctgctcaaggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaagctagcacttgatttgaaagc 39144679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 147 - 362
Target Start/End: Original strand, 39216550 - 39216768
Alignment:
Q  147 tcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaaa---ggagacaatgctgcaattattgatgatttccaca 243  Q
    |||||||||||||||| |  |||||||||||| || |||||||| |  |||| |||||||||    |||||||||||||  ||||||| ||||| ||| |    
T  39216550 tcatcagatccatcaagacttgttttggatatgatacagaaccctactattcaattgtgtaagaagggagacaatgctgtgattattgctgattaccata 39216649  T
Q  244 ttgatttgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgcaatgagtctagcacttaatttgaaagcttacattgg 343  Q
    || ||| ||| ||||||||||||| ||||||||| ||| ||||||||  |||   |||||| ||| |||  |||||| || |||||||| || ||||  |    
T  39216650 tttattcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgag 39216749  T
Q  344 ggaaaatactgaaaattct 362  Q
     ||||||||| ||||||||    
T  39216750 tgaaaatactaaaaattct 39216768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 362
Target Start/End: Complemental strand, 39397041 - 39396723
Alignment:
Q  44 aagtcctaccattgatggaagaagtttgcagttgctcccaattgagcaaattgatgaacttgagtcacgtggcaatgacattctagctaatctgctagca 143  Q
    |||||||||||||||||||| |||||||||||||  |   | |||  |||  |||| | ||||||||| | |||||||||||   | | ||||||||| |    
T  39397041 aagtcctaccattgatggaacaagtttgcagttggacatgagtgataaaaccgatggagttgagtcacttcgcaatgacatttatgtttatctgctagaa 39396942  T
Q  144 tcatcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgt---aaaggagacaatgctgcaattattgatgatttcc 240  Q
    ||||||   |||||||||| |  |||||||||||| || || |||||||| |||||| |||||   || |||||||||| ||   ||||||| |||  ||    
T  39396941 tcatca---gatccatcaagacttgttttggatataatacaaaaccccattattccactgtgtaagaagggagacaatggtgtggttattgaggatagcc 39396845  T
Q  241 acattgatttgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgcaatgagtctagcacttaatttgaaagcttacat 340  Q
    ||||  |  |||| ||| ||||||||||||||||||||  | ||| ||||  |||   |||||| ||| |||  ||||||| | |||||| |||||||||    
T  39396844 acatctacgtgctagaagaactgatgagaatctcaccaactattagaccttgtgtaagagaagaagcactgaagctagcacatgatttgagagcttacat 39396745  T
Q  341 tggggaaaatactgaaaattct 362  Q
    | | ||||||||||||||||||    
T  39396744 tagagaaaatactgaaaattct 39396723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 39604119 - 39604173
Alignment:
Q  30 acagatgatcaaccaagtcctaccattgatggaagaagtttgcagttgctcccaa 84  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  39604119 acagatgatcaatcaactcctaccattgatggaagaagtttgcagttgctcccaa 39604173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 146 - 362
Target Start/End: Complemental strand, 39196800 - 39196581
Alignment:
Q  146 atcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaaa---ggagacaatgctgcaattattgatgatttccac 242  Q
    |||||||||||||||||||  ||||||||| || || | ||||||||||||||||  |||  ||   ||||| |||||||   |||||| ||||| |||     
T  39196800 atcatcagatccatcaaaacttgttttggaaatgatactgaaccccatcattccacagtgggaaaagggagataatgctgtggttattgttgattaccaa 39196701  T
Q  243 attgatttgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgcaatgagtctagcacttaatttgaaagcttacattg 342  Q
    ||  || |||| |||||||||||||||||||||||| || ||||||||  ||||  | |||| ||| |||  |||||| || ||||||||||| ||||      
T  39196700 atctatctgctggaacaactgatgagaatctcaccagatattaaaccttgtgtgagaaaagaagcattgaagctagcatttgatttgaaagctaacatga 39196601  T
Q  343 gggaaaatactgaaaattct 362  Q
      || |||||||||||||||    
T  39196600 atgacaatactgaaaattct 39196581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 45 - 359
Target Start/End: Complemental strand, 39421571 - 39421257
Alignment:
Q  45 agtcctaccattgatggaagaagtttgcagttgctcccaattgagcaaattgatgaacttgagtcacgtggcaatgacattctagctaatctgctagcat 144  Q
    |||||| |||||| ||||| ||||||||||||||||||| ||||||| | |||||||| |||||| | |||  ||||||||| ||  ||||||| ||       
T  39421571 agtcctgccattgttggaacaagtttgcagttgctcccatttgagcagactgatgaacctgagtcccctggtgatgacattcaagtcaatctgcaag--- 39421475  T
Q  145 catcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgt---aaaggagacaatgctgcaattattgatgatttcca 241  Q
     ||  ||||||||| || |   |||||||||||| || ||||||||||| |||| |  || |   || |||||||||| ||| |||||||| ||   |||    
T  39421474 gattttcagatccagcacatgctgttttggatataatacagaaccccattattcaaaagtataagaagggagacaatgatgcgattattgaagagaacca 39421375  T
Q  242 cattgatttgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgcaatgagtctagcacttaatttgaaagcttacatt 341  Q
    |||   | |||| ||||||||||||| ||||||||||||| ||||| ||  |||  ||||||| ||| |||  || || ||| ||||||||||| | ||     
T  39421374 catctttctgctagaacaactgatgaaaatctcaccacatattaaaacttgtgtaaaagaagaagcattgaagctcgctcttgatttgaaagctaatatg 39421275  T
Q  342 ggggaaaatactgaaaat 359  Q
    |  |||||||||||||||    
T  39421274 gaagaaaatactgaaaat 39421257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 39099390 - 39099444
Alignment:
Q  30 acagatgatcaaccaagtcctaccattgatggaagaagtttgcagttgctcccaa 84  Q
    |||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||    
T  39099390 acagatgatcaatcaactcctaccattgatggaagaagtttgaagttgctcccaa 39099444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 149 - 340
Target Start/End: Complemental strand, 39189041 - 39188847
Alignment:
Q  149 atcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaaa---ggagacaatgctgcaattattgatgatttccacatt 245  Q
    ||||||||| ||||||  |||||||||||| || ||||||||||| |||| |  |||| |    |||||||||| || |||||||||||||  |||||||    
T  39189041 atcagatccttcaaaagttgttttggatataatacagaaccccattattcaaaagtgtgagatgggagacaatgttgtaattattgatgatagccacatt 39188942  T
Q  246 gatttgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgcaatgagtctagcacttaatttgaaagcttacat 340  Q
      | |||||  |  ||||||||||||||||||  |  |||||||||||||   ||| ||||||||||  ||||||||| |||| |||||| ||||    
T  39188941 cttctgctcatagtactgatgagaatctcacctgacattaaacctcatgtaagagaggatgcaatgaaactagcacttgatttaaaagctaacat 39188847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 290
Target Start/End: Original strand, 39099482 - 39099626
Alignment:
Q  149 atcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaaa---ggagacaatgctgcaattattgatgatttccacatt 245  Q
    ||||||||||||||||   ||||||||||| || ||||| ||||| |||| |  || |||    ||||||||||||| ||||||||||||     |||||    
T  39099482 atcagatccatcaaaagtcgttttggatataatacagaatcccattattcaaaagtataagatgggagacaatgctgtaattattgatgaaagagacatt 39099581  T
Q  246 gatttgctcgaacaactgatgagaatctcaccacatgttaaacct 290  Q
      | |||||||||||||||||||||||||||||||| | ||||||    
T  39099582 cttctgctcgaacaactgatgagaatctcaccacatatcaaacct 39099626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 39138452 - 39138503
Alignment:
Q  33 gatgatcaaccaagtcctaccattgatggaagaagtttgcagttgctcccaa 84  Q
    |||||||||  |||||| ||||||||||||| ||||||||||||||||||||    
T  39138452 gatgatcaattaagtccaaccattgatggaacaagtttgcagttgctcccaa 39138503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 362
Target Start/End: Original strand, 39138538 - 39138754
Alignment:
Q  146 atcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaaa---ggagacaatgctgcaattattgatgatttccac 242  Q
    ||||||||||||| |||||  |||||||||||| || ||||| || || ||||||  ||||||    |||||  ||||||  ||||||||||||  |  |    
T  39138538 atcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaatggagaacatgctgtgattattgatgatggctgc 39138637  T
Q  243 attgatttgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgcaatgagtctagcacttaatttgaaagcttacattg 342  Q
    ||   | |||| |||||||||||||||||||||||  |  |||||||| ||||   |||||| ||| |||  |||||||||||| |||||||| ||||      
T  39138638 atctttctgctagaacaactgatgagaatctcaccgaagattaaacctgatgtaagagaagaagcattgaagctagcacttaatctgaaagctaacat-- 39138735  T
Q  343 gggaaaatactgaaaattct 362  Q
     | |||||||||||||||||    
T  39138736 -gaaaaatactgaaaattct 39138754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 138
Target Start/End: Original strand, 39131134 - 39131228
Alignment:
Q  44 aagtcctaccattgatggaagaagtttgcagttgctcccaattgagcaaattgatgaacttgagtcacgtggcaatgacattctagctaatctgc 138  Q
    |||||| |||||||||| ||||||||||  ||||||||||  ||||| || ||||||||||||||    || | |||||||||||| ||||||||    
T  39131134 aagtcccaccattgatgaaagaagtttgatgttgctcccatgtgagctaactgatgaacttgagttgtctgactatgacattctaggtaatctgc 39131228  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 39126485 - 39126567
Alignment:
Q  250 tgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgcaatgagtctagcacttaatttgaaa 332  Q
    ||||||||||||||||||||||||||| | || || |||||| |||   |||||| |||||||  ||||| ||||| ||||||    
T  39126485 tgctcgaacaactgatgagaatctcactaaatattgaacctcgtgtaagagaagaagcaatgaagctagctcttaaattgaaa 39126567  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 39223606 - 39223660
Alignment:
Q  146 atcatcagatccatcaaaatatgttttggatattatccagaaccccatcattcca 200  Q
    |||||||||||||||||||  ||||||||| || || | ||||||||||||||||    
T  39223606 atcatcagatccatcaaaacttgttttggaaatgatactgaaccccatcattcca 39223660  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 39152880 - 39152916
Alignment:
Q  48 cctaccattgatggaagaagtttgcagttgctcccaa 84  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  39152880 cctactattgatggaacaagtttgcagttgctcccaa 39152916  T

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Target: chr3 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 20 - 361
Target Start/End: Original strand, 51575757 - 51576095
Alignment:
Q  20 tacatcttttacagatgatcaaccaagtcctaccattgatggaagaagtttgcagttgctcccaattgagcaaattgatgaacttgagtcacgtggcaat 119  Q
    ||||||||| ||||| ||||| |||| |||| |||||||||||||||| |||||||| |||| | |||| || | ||| ||||||||||||| ||| |||    
T  51575757 tacatctttcacagaagatcatccaaatcctgccattgatggaagaagcttgcagtttctccgagttgaacagactgacgaacttgagtcacatggaaat 51575856  T
Q  120 gacattctagctaatctgctagcatcatcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaaaggagacaatg 219  Q
    ||||||||||  ||||| |||||||| |||   |||||||||||| ||||| ||||||| || ||||||| ||||||||||   ||||| ||||||||||    
T  51575857 gacattctagtcaatcttctagcatcctca---gatccatcaaaagatgttctggatataatacagaaccacatcattccacattgtaagggagacaatg 51575953  T
Q  220 ctgcaattattgatgatttccacattgatttgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgcaatgagtctagc 319  Q
     || || |||| ||| |  |||| ||| | |||| |||||||| |||||||||||||||||| | ||||||||||| |||||||| ||| |||  ||||     
T  51575954 ttgtaactattaatggtagccacgttgttctgcttgaacaactaatgagaatctcaccacatatcaaacctcatgtacaagaagaagcattgaaactagt 51576053  T
Q  320 acttaatttgaaagcttacattggggaaaatactgaaaattc 361  Q
     || ||||||||||| |||||| | |||||||||||||||||    
T  51576054 cctcaatttgaaagcgtacattagtgaaaatactgaaaattc 51576095  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 340
Target Start/End: Original strand, 33562103 - 33562378
Alignment:
Q  65 aagtttgcagttgctcccaattgagcaaattgatgaacttgagtcacgtggcaatgacattctagctaatctgctagcatcatcatcagatccatcaaaa 164  Q
    |||||||||||||  | ||| |||| ||| ||||| | ||||||||| |  |||||  ||| |||||||||||| || ||||   |||||||||||||||    
T  33562103 aagtttgcagttggacacaagtgagaaaactgatggagttgagtcactttacaatggtattttagctaatctgcaagaatca---tcagatccatcaaaa 33562199  T
Q  165 tatgttttggatattatccagaaccccatcattccattgtgt---aaaggagacaatgctgcaattattgatgatttccacattgatttgctcgaacaac 261  Q
      ||||||||| || || | |||||||||| ||||| |||||   || |||||||||| ||  ||||||| ||||| ||| ||  || | || |||||||    
T  33562200 cttgttttggaaatgatactgaaccccatctttccactgtgtcaaaagggagacaatgttgtcattattgttgattaccaaatctatcttctggaacaac 33562299  T
Q  262 tgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgcaatgagtctagcacttaatttgaaagcttacat 340  Q
    ||||||||||||||||| || || |||||  ||||  | |||| ||| |||  |||||| || ||||||||||| ||||    
T  33562300 tgatgagaatctcaccagatattgaaccttgtgtgagaaaagaagcattgaagctagcatttgatttgaaagctaacat 33562378  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 19808312 - 19808352
Alignment:
Q  44 aagtcctaccattgatggaagaagtttgcagttgctcccaa 84  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  19808312 aagtccaaccattgatggaacaagtttgcagttgctcccaa 19808352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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