View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7954_low_3 (Length: 386)
Name: NF7954_low_3
Description: NF7954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7954_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 13 - 372
Target Start/End: Complemental strand, 44891338 - 44890979
Alignment:
| Q |
13 |
gaaatgaatattctgatattcttaatgatggatgtagtgaagaacattggaagaaaacgaatatagataagagaagaaagactgaatatagtctaccaag |
112 |
Q |
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| T |
44891338 |
gaaatgaatattctggtactcttaatgatggatgtattgaagaacattggaagaaaacgaatatagataagagaagaaagactgaatatagtctaccaag |
44891239 |
T |
|
| Q |
113 |
tgagtccacgaagcaaattggtgctgaacaatactagttagtcctacatcgtgtagtcaagagagtgagtaaatggatgtatgatataaaagtggaagtg |
212 |
Q |
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| T |
44891238 |
tgagtccacgaagcaagttggtgctgaacaatactagttagtcctacatcgtgtagtcaagagagtgagtaaatggatgtatgatataaaagtagaagtg |
44891139 |
T |
|
| Q |
213 |
agtaccacatataattcatacctttctccaccttttcttggtcttttggctaagatcaaagtgtagtgtacgtttttatctgtttaatatcaagaaatta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44891138 |
agtaccacatataattcatacctttctccaccttttcttggtcttttggctaagatcaaagtgtagtgtacgtttttatctgtttaatatcaagaaatta |
44891039 |
T |
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| Q |
313 |
aactagttttttgaggaagcagtagtttgctggttaaaatgctgaatcgtaaaccttctg |
372 |
Q |
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| T |
44891038 |
aactagttttttgaggaagcagcagtttgctggttaaaatgccgaatcgtaaaccttctg |
44890979 |
T |
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