View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7954_low_4 (Length: 298)
Name: NF7954_low_4
Description: NF7954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7954_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 34228895 - 34228609
Alignment:
| Q |
1 |
aaagtatcttgctttgagaattattgccaccaaagagtccagtttctgcaagatacgccactccacccttgcatcgccactccacccttttcgaggcatg |
100 |
Q |
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| T |
34228895 |
aaagtatcttgctttgagaattattgccaccaaagtgtccagtttctgcaagatacgccactccacccttgcatcgccactccacccttttcgaggcatg |
34228796 |
T |
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| Q |
101 |
aattacttcaatagcctccacgaaagcatattcttcatgagaaatacacttgtcaaggcagcatttcaatttgttagcaagaagtttggaaatcatttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34228795 |
aattacttcaatagcctccacgaaagcatattcttcatgagaaatacacttgtcaaggcagcatttcaatctgttagcaagaagtttggaaatcatttta |
34228696 |
T |
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| Q |
201 |
tacaatacgttacacaactagataggacacaaacccctcatggaaataggattttcacacttcggaataagccagatattcatctca |
287 |
Q |
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| T |
34228695 |
tacaagacgttacacaactagataggacacaaatccctcatggaaataggattttcacacttcggaataagccagatattcatctca |
34228609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 34237515 - 34237455
Alignment:
| Q |
1 |
aaagtatcttgctttgagaattattgccaccaaagagtccagtttctgcaagatacgccac |
61 |
Q |
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||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34237515 |
aaagtatattgatttgagaatttttgccaccaaagagtccagtttctgcaagatacgccac |
34237455 |
T |
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