View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7954_low_8 (Length: 239)

Name: NF7954_low_8
Description: NF7954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7954_low_8
NF7954_low_8
[»] chr1 (7 HSPs)
chr1 (1-223)||(52871753-52871975)
chr1 (170-223)||(50945868-50945921)
chr1 (174-214)||(33218557-33218597)
chr1 (174-224)||(10427857-10427907)
chr1 (170-215)||(49303677-49303722)
chr1 (183-215)||(9848539-9848571)
chr1 (183-215)||(42470278-42470310)
[»] chr5 (7 HSPs)
chr5 (171-214)||(14525665-14525708)
chr5 (172-223)||(7123625-7123676)
chr5 (170-215)||(40693125-40693170)
chr5 (171-215)||(39065750-39065794)
chr5 (174-223)||(5856249-5856298)
chr5 (171-223)||(10242593-10242645)
chr5 (183-215)||(40293186-40293218)
[»] chr8 (7 HSPs)
chr8 (171-218)||(11911884-11911931)
chr8 (178-210)||(1356677-1356709)
chr8 (165-207)||(3541392-3541434)
chr8 (181-213)||(1351871-1351903)
chr8 (171-215)||(3914243-3914287)
chr8 (171-215)||(9270638-9270682)
chr8 (182-218)||(38457116-38457152)
[»] chr3 (4 HSPs)
chr3 (171-215)||(32797446-32797490)
chr3 (170-218)||(54114498-54114546)
chr3 (170-215)||(47410325-47410370)
chr3 (171-215)||(1148953-1148997)
[»] chr7 (3 HSPs)
chr7 (170-199)||(5319085-5319114)
chr7 (170-215)||(20245188-20245233)
chr7 (170-215)||(20249226-20249271)
[»] chr4 (3 HSPs)
chr4 (182-223)||(2765894-2765935)
chr4 (170-198)||(12520520-12520548)
chr4 (183-223)||(39678301-39678341)
[»] chr2 (2 HSPs)
chr2 (170-223)||(7302412-7302465)
chr2 (174-215)||(32216994-32217035)
[»] scaffold0157 (1 HSPs)
scaffold0157 (170-198)||(369-397)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 52871753 - 52871975
Alignment:
Q  1 cgattttaattttggttgtatgatacaagtttggttttttatctatgtttccttattgtgatttttatactgtgtttctttgtgttaggaatggtttgtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52871753 cgattttaattttggttgtatgatacaagtttggttttttatctatgtttccttattgtgatttttatactgtgtttctttgtgttaggaatggtttgtc 52871852  T
Q  101 taattcatgcatggttgaagtcttattactattaattatcggtatagtttttgtgttcgtatgactcaactttttattgtgttaatgcgtataaattaca 200  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  52871853 taattcatgcatggttgaagtcttattactattaattattgctatagtttttgtgttcttatgactcaactttttattgtgttaatgcgtataaattaca 52871952  T
Q  201 aacaataatttttataaagtttt 223  Q
    |||||||||||||||||||||||    
T  52871953 aacaataatttttataaagtttt 52871975  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 50945921 - 50945868
Alignment:
Q  170 ctttttattgtgttaatgcgtataaattacaaacaataatttttataaagtttt 223  Q
    ||||||||||||||||||||||||| |||  ||||||| |||||||||| ||||    
T  50945921 ctttttattgtgttaatgcgtataacttaagaacaatagtttttataaaatttt 50945868  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 33218597 - 33218557
Alignment:
Q  174 ttattgtgttaatgcgtataaattacaaacaataattttta 214  Q
    ||||| |||||||||||||||||||||||| ||||||||||    
T  33218597 ttattatgttaatgcgtataaattacaaacgataattttta 33218557  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 10427857 - 10427907
Alignment:
Q  174 ttattgtgttaatgcgtataaattacaaacaataatttttataaagttttt 224  Q
    |||||| || ||||||||||||||| ||| ||||||||||||||| |||||    
T  10427857 ttattgcgtcaatgcgtataaattataaataataatttttataaatttttt 10427907  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 49303677 - 49303722
Alignment:
Q  170 ctttttattgtgttaatgcgtataaattacaaacaataatttttat 215  Q
    |||||||||| |||||||||||||||| || ||||||| |||||||    
T  49303677 ctttttattgcgttaatgcgtataaatgactaacaatattttttat 49303722  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 9848571 - 9848539
Alignment:
Q  183 taatgcgtataaattacaaacaataatttttat 215  Q
    ||||||| |||||||||||||||||||||||||    
T  9848571 taatgcgcataaattacaaacaataatttttat 9848539  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 42470278 - 42470310
Alignment:
Q  183 taatgcgtataaattacaaacaataatttttat 215  Q
    |||||||| ||||||||||||||||||||||||    
T  42470278 taatgcgtttaaattacaaacaataatttttat 42470310  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 14525665 - 14525708
Alignment:
Q  171 tttttattgtgttaatgcgtataaattacaaacaataattttta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  14525665 tttttattgtgttaatgcgtataaattacaaacaataattttta 14525708  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 7123625 - 7123676
Alignment:
Q  172 ttttattgtgttaatgcgtataaattacaaacaataatttttataaagtttt 223  Q
    |||||||| ||||||| ||||||||||| |||||||||||||||||| ||||    
T  7123625 ttttattgcgttaatgtgtataaattacgaacaataatttttataaaatttt 7123676  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 40693125 - 40693170
Alignment:
Q  170 ctttttattgtgttaatgcgtataaattacaaacaataatttttat 215  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||||    
T  40693125 ctttttattgtgttaatgcatataaattacgaacaatattttttat 40693170  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 39065794 - 39065750
Alignment:
Q  171 tttttattgtgttaatgcgtataaattacaaacaataatttttat 215  Q
    ||||||||||| ||||||||||||||||| |||| ||||||||||    
T  39065794 tttttattgtgctaatgcgtataaattacgaacattaatttttat 39065750  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 5856249 - 5856298
Alignment:
Q  174 ttattgtgttaatgcgtataaattacaaacaataatttttataaagtttt 223  Q
    |||||| | ||||| ||||||||||||||||||| |||||||||| ||||    
T  5856249 ttattgcgctaatgagtataaattacaaacaatagtttttataaaatttt 5856298  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 10242645 - 10242593
Alignment:
Q  171 tttttattgtgttaatgcgtataaattacaaacaataatttttataaagtttt 223  Q
    ||||||||  |||||||| |||||||||||||||||| ||||| |||| ||||    
T  10242645 tttttattacgttaatgcatataaattacaaacaatattttttctaaattttt 10242593  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 40293218 - 40293186
Alignment:
Q  183 taatgcgtataaattacaaacaataatttttat 215  Q
    |||||| ||||||||||||||||||||||||||    
T  40293218 taatgcatataaattacaaacaataatttttat 40293186  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 11911884 - 11911931
Alignment:
Q  171 tttttattgtgttaatgcgtataaattacaaacaataatttttataaa 218  Q
    ||||||||| ||||||||||||||||||||||||||| ||||| ||||    
T  11911884 tttttattgcgttaatgcgtataaattacaaacaatagtttttgtaaa 11911931  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 1356709 - 1356677
Alignment:
Q  178 tgtgttaatgcgtataaattacaaacaataatt 210  Q
    |||||||||||||||||||||||||||||||||    
T  1356709 tgtgttaatgcgtataaattacaaacaataatt 1356677  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 3541434 - 3541392
Alignment:
Q  165 ctcaactttttattgtgttaatgcgtataaattacaaacaata 207  Q
    |||| ||||||||||||||||| ||||||||||||||| ||||    
T  3541434 ctcatctttttattgtgttaatacgtataaattacaaataata 3541392  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Complemental strand, 1351903 - 1351871
Alignment:
Q  181 gttaatgcgtataaattacaaacaataattttt 213  Q
    |||||||||| ||||||||||||||||||||||    
T  1351903 gttaatgcgtgtaaattacaaacaataattttt 1351871  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 3914287 - 3914243
Alignment:
Q  171 tttttattgtgttaatgcgtataaattacaaacaataatttttat 215  Q
    |||| |||||| |||||| |||||||||||||||||||| |||||    
T  3914287 ttttgattgtgctaatgcatataaattacaaacaataatatttat 3914243  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 9270638 - 9270682
Alignment:
Q  171 tttttattgtgttaatgcgtataaattacaaacaataatttttat 215  Q
    |||||||||||||||||| ||| ||| ||||| ||||||||||||    
T  9270638 tttttattgtgttaatgcatatgaatcacaaataataatttttat 9270682  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 38457116 - 38457152
Alignment:
Q  182 ttaatgcgtataaattacaaacaataatttttataaa 218  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  38457116 ttaatgcgtacaaattacgaacaataatttttataaa 38457152  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 32797490 - 32797446
Alignment:
Q  171 tttttattgtgttaatgcgtataaattacaaacaataatttttat 215  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||||    
T  32797490 tttttattgtgctaatgtgtataaattacgaacaataatttttat 32797446  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 54114546 - 54114498
Alignment:
Q  170 ctttttattgtgttaatgcgtataaattacaaacaataatttttataaa 218  Q
    |||||||||| | |||||| |||||||||| ||||||||||||||||||    
T  54114546 ctttttattgcgctaatgcatataaattacgaacaataatttttataaa 54114498  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 47410325 - 47410370
Alignment:
Q  170 ctttttattgtgttaatgcgtataaattacaaacaataatttttat 215  Q
    |||| ||||| ||||||| ||||||||||| |||||||||||||||    
T  47410325 ctttatattgcgttaatgtgtataaattacgaacaataatttttat 47410370  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 1148997 - 1148953
Alignment:
Q  171 tttttattgtgttaatgcgtataaattacaaacaataatttttat 215  Q
    ||||| |||||||||||||||||||| || ||||||| |||||||    
T  1148997 ttttttttgtgttaatgcgtataaatcacgaacaatagtttttat 1148953  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 199
Target Start/End: Original strand, 5319085 - 5319114
Alignment:
Q  170 ctttttattgtgttaatgcgtataaattac 199  Q
    ||||||||||||||||||||||||||||||    
T  5319085 ctttttattgtgttaatgcgtataaattac 5319114  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 20245233 - 20245188
Alignment:
Q  170 ctttttattgtgttaatgcgtataaattacaaacaataatttttat 215  Q
    |||||||||  |||||||||||||||||||||| |||| |||||||    
T  20245233 ctttttatttcgttaatgcgtataaattacaaataatattttttat 20245188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 20249271 - 20249226
Alignment:
Q  170 ctttttattgtgttaatgcgtataaattacaaacaataatttttat 215  Q
    |||||||||  |||||||||||||||||||||| |||| |||||||    
T  20249271 ctttttatttcgttaatgcgtataaattacaaataatattttttat 20249226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 2765894 - 2765935
Alignment:
Q  182 ttaatgcgtataaattacaaacaataatttttataaagtttt 223  Q
    ||||| |||||||||||| ||||||||||||||| |||||||    
T  2765894 ttaatacgtataaattacgaacaataatttttatgaagtttt 2765935  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 198
Target Start/End: Original strand, 12520520 - 12520548
Alignment:
Q  170 ctttttattgtgttaatgcgtataaatta 198  Q
    |||||||||||||||||||||||||||||    
T  12520520 ctttttattgtgttaatgcgtataaatta 12520548  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 39678341 - 39678301
Alignment:
Q  183 taatgcgtataaattacaaacaataatttttataaagtttt 223  Q
    ||||||||||||||||| ||||| |||||||||||| ||||    
T  39678341 taatgcgtataaattacgaacaacaatttttataaaatttt 39678301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 7302465 - 7302412
Alignment:
Q  170 ctttttattgtgttaatgcgtataaattacaaacaataatttttataaagtttt 223  Q
    ||||||||||| |||||| | |||||||||||||| |||||| |||||| ||||    
T  7302465 ctttttattgtattaatgtgcataaattacaaacattaatttatataaaatttt 7302412  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 32216994 - 32217035
Alignment:
Q  174 ttattgtgttaatgcgtataaattacaaacaataatttttat 215  Q
    |||||| |||||||||||||||||| |||||||| |||||||    
T  32216994 ttattgcgttaatgcgtataaattataaacaatattttttat 32217035  T

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Target: scaffold0157 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 198
Target Start/End: Complemental strand, 397 - 369
Alignment:
Q  170 ctttttattgtgttaatgcgtataaatta 198  Q
    |||||||||||||||||||||||||||||    
T  397 ctttttattgtgttaatgcgtataaatta 369  T

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