View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7955_low_3 (Length: 313)
Name: NF7955_low_3
Description: NF7955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7955_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 19124043 - 19124336
Alignment:
| Q |
1 |
gtgtccaacacttacataaaagtttagccgtatacacatttagtcacaattgaattaatataaaatttcccatcaataaatagaaataaattttgataac |
100 |
Q |
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| T |
19124043 |
gtgtccaacacttatataaaagtttagctgtatacacatt-agtcacaattgaattaatataaaatttcccatcaataaatagaaataaattttgataac |
19124141 |
T |
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| Q |
101 |
aaaaaatgtcacgacagaaaggaaattaggattctagctcctacattaatctcatatatcattatggtgggggaaatttcttctctctaggaaacatccg |
200 |
Q |
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| T |
19124142 |
aaaaaatgtcacgacagaaaggaaattaggattcttgctcctacattaatctcatatatcattatggtgggggaaatttcttctctctaggaaacatccg |
19124241 |
T |
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| Q |
201 |
tagtggaaaatatctatatcaattggtggcaaacgttcagaacattgaagtccagaaagatttttcactttcttttcaattactactatactatt |
295 |
Q |
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| T |
19124242 |
tagtggaaaatatctatatcaattggtggcaaacgttcagaacattgaagtccagaaagatttttcactttcttttcaattactactatactatt |
19124336 |
T |
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