View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7955_low_4 (Length: 298)
Name: NF7955_low_4
Description: NF7955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7955_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 45 - 287
Target Start/End: Complemental strand, 30361039 - 30360797
Alignment:
| Q |
45 |
agcacagatgagaaaatttaaggcgcaaccagtattaaaagagtgagcaatcaagactttttttaagcatgcgtattttcttccaaagaaattttaacaa |
144 |
Q |
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| T |
30361039 |
agcacagatgagaaaatttaaggcgcaaccagtattaaaagagtgagcaatcaagactttttttaagcatgcgtattttcttcaaaagaaatttaaacaa |
30360940 |
T |
|
| Q |
145 |
ccaggacnnnnnnnncttttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttcttttcatctgaatgtaccttgcagggaccca |
244 |
Q |
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| T |
30360939 |
ccaggacttttttttcatttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttcttttcatctgaatgtaccttgcagggaccca |
30360840 |
T |
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| Q |
245 |
atcccagttccagagaaggtccgtaaaccccttacacaggttc |
287 |
Q |
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| T |
30360839 |
atcccagttccagagaaggtccgcaaaccccttacacaggttc |
30360797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 45 - 282
Target Start/End: Complemental strand, 19916435 - 19916201
Alignment:
| Q |
45 |
agcacagatgagaaaatttaaggcgcaaccagtattaaaagagtgagcaatcaagacttttttt-aagcatgcgtattttcttccaaagaaattttaaca |
143 |
Q |
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|||||||||||||||||||||||| | |||||| ||||||||||| | ||| |||||||||| ||||||||||| |||||| |||||||||| ||| |
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| T |
19916435 |
agcacagatgagaaaatttaaggcactgccagta--aaaagagtgagaattcaggacttttttttaagcatgcgtactttctttgaaagaaatttaaac- |
19916339 |
T |
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| Q |
144 |
accaggacnnnnnnnn-cttttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttcttttcatctgaatgtaccttgcagggacc |
242 |
Q |
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|| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19916338 |
--caatactttttttatcctttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttcttttcatatgaatgtaccttgcagggacc |
19916241 |
T |
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| Q |
243 |
caatcccagttccagagaaggtccgtaaaccccttacaca |
282 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |
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| T |
19916240 |
caatcccagttccagagaaggtccgcaaaccccttacaca |
19916201 |
T |
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