View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7955_low_5 (Length: 239)

Name: NF7955_low_5
Description: NF7955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7955_low_5
NF7955_low_5
[»] chr1 (2 HSPs)
chr1 (4-223)||(25590691-25590910)
chr1 (57-150)||(51119481-51119573)
[»] chr8 (1 HSPs)
chr8 (31-151)||(26794241-26794361)
[»] chr4 (4 HSPs)
chr4 (32-202)||(11494070-11494238)
chr4 (42-151)||(9881284-9881393)
chr4 (53-144)||(28964807-28964897)
chr4 (35-148)||(7043333-7043447)
[»] chr3 (2 HSPs)
chr3 (31-202)||(51810511-51810680)
chr3 (53-150)||(1663316-1663412)
[»] chr5 (1 HSPs)
chr5 (31-207)||(14234054-14234221)
[»] chr6 (1 HSPs)
chr6 (29-148)||(29010809-29010927)
[»] chr2 (3 HSPs)
chr2 (29-207)||(6962077-6962246)
chr2 (73-148)||(12635177-12635251)
chr2 (35-96)||(40498053-40498114)
[»] chr7 (1 HSPs)
chr7 (80-207)||(8265817-8265942)
[»] scaffold0019 (1 HSPs)
scaffold0019 (31-148)||(59463-59578)
[»] scaffold1064 (1 HSPs)
scaffold1064 (31-67)||(2206-2242)


Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 25590691 - 25590910
Alignment:
Q  4 gagcagaacctgtgttctattgcgcataatagagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataag 103  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25590691 gagcagaaactgtgttctattgcgcataatagagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacgttacaaagcctttatataag 25590790  T
Q  104 caaaactaacacttgcttgtaacacaagctatctcactaactaactagnnnnnnnaacaaattcttaactaactaggttaaggtggcagttatgaattat 203  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  25590791 caaaactaacacttgcttgtaacataacctatctcactaactaactagtttttttaacaaattcttaactaactaggttaaggtggcagttatgaattat 25590890  T
Q  204 ttctaatttcatcacatatg 223  Q
    ||||||||||||||||||||    
T  25590891 ttctaatttcatcacatatg 25590910  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 51119573 - 51119481
Alignment:
Q  57 aatctcattaagaagtgaatgtacacattacaaagcctttatataagcaaaactaacacttgcttgtaacacaagctatctcactaactaacta 150  Q
    |||||||||||||| | ||||||||||||||||||||||| |||| |||||  |||||||| |||||| |||||||||||| ||||||||||||    
T  51119573 aatctcattaagaattaaatgtacacattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaacta 51119481  T

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Target: chr8 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 26794241 - 26794361
Alignment:
Q  31 aatagagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataagcaaaactaacacttgcttgtaacacaa 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||    
T  26794241 aatagagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataggcaaaactaacacttgcttgtagaacaa 26794340  T
Q  131 gctatctcactaactaactag 151  Q
    |||| ||| ||||||||||||    
T  26794341 gctaactccctaactaactag 26794361  T

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Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 32 - 202
Target Start/End: Complemental strand, 11494238 - 11494070
Alignment:
Q  32 atagagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataagcaaaactaacacttgcttgtaacacaag 131  Q
    ||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||| |||||     
T  11494238 atagagagagtatacttgcaatgcgaatctcattaagaagtgaatgtacacattacaaagcctatatataggcaaaactaatacttgcttgtagcacaaa 11494139  T
Q  132 ctatctcactaactaactagnnnnnnnaacaaattcttaactaactaggttaaggtggcagttatgaatta 202  Q
    ||||||||| ||||||||||       ||||||||||||||||||||| || || ||||||||||||||||    
T  11494138 ctatctcacaaactaactag-ttttgtaacaaattcttaactaactagctt-agctggcagttatgaatta 11494070  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 9881393 - 9881284
Alignment:
Q  42 tatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataagcaaaactaacacttgcttgtaacacaagctatctcact 141  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||  |||||||| |||  |    
T  9881393 tatgcttacaatgtgaatctcattaagtagtgaatgtacacattacaaagccgttatataggcaaaactaacactttcttgtagaacaagctaactccat 9881294  T
Q  142 aactaactag 151  Q
    ||||||||||    
T  9881293 aactaactag 9881284  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 28964807 - 28964897
Alignment:
Q  53 tgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataagcaaaactaacacttgcttgtaacacaagctatctcactaac 144  Q
    |||||||||||||||||| |||||| |||||||||||||||||| ||||||||||   ||||||||||||||  ||||||||||| ||||||    
T  28964807 tgtgaatctcattaagaattgaatgcacacattacaaagccttt-tataagcaaatacaacacttgcttgtagtacaagctatctaactaac 28964897  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 7043333 - 7043447
Alignment:
Q  35 gagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataagcaaaacta--acacttgcttgtaacacaagc 132  Q
    |||||| | |||||| ||| ||||||||||||||  |||||||||||||||||| ||||||| |||| | | |  ||  ||||||||||||| |||||||    
T  7043333 gagagagtttgcttgtaatatgaatctcattaagttgtgaatgtacacattacatagccttt-tataggtatatatatcacacttgcttgtagcacaagc 7043431  T
Q  133 tatctcactaactaac 148  Q
    ||||| ||||||||||    
T  7043432 tatctaactaactaac 7043447  T

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Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 31 - 202
Target Start/End: Complemental strand, 51810680 - 51810511
Alignment:
Q  31 aatagagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataagcaaaactaacacttgcttgtaacacaa 130  Q
    |||| ||| |||||||||||||||||||||||| | |||||||||| || ||||||||||||||||||||| |||||||||||| ||||||||| |||||    
T  51810680 aataaagatattatgcttgcaatgtgaatctcaatgagaagtgaatttatacattacaaagcctttatataggcaaaactaacatttgcttgtagcacaa 51810581  T
Q  131 gctatctcactaactaactagnnnnnnnaacaaattcttaactaactaggttaaggtggcagttatgaatta 202  Q
    ||||||||||| | |||||||       ||| ||||||||||||||||| || |||||||||| ||||||||    
T  51810580 gctatctcactgattaactag-ttttgtaaccaattcttaactaactagctt-aggtggcagtcatgaatta 51810511  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 1663412 - 1663316
Alignment:
Q  53 tgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataagcaaaactaacacttgcttgtaacacaagctatctcactaactaacta 150  Q
    |||||||||||||||||| ||||||||||| |||||||| ||||  ||| |||||  ||||||||| ||||| |||||||||||| |||||| |||||    
T  1663412 tgtgaatctcattaagaattgaatgtacaccttacaaagacttt-cataggcaaatataacacttgtttgtagcacaagctatctaactaacaaacta 1663316  T

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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 31 - 207
Target Start/End: Complemental strand, 14234221 - 14234054
Alignment:
Q  31 aatagagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataagcaaaactaacacttgcttgtaacacaa 130  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||   ||||    
T  14234221 aatagagacattatgcttgcaatttgaatctcattaagaagtgaatgtacacattacaaagcctttat-------aaactaacacttgcttgttgaacaa 14234129  T
Q  131 gctatctcactaactaactagnnnnnnnaacaaattcttaactaactaggttaaggtggcagttatgaattatttct 207  Q
    ||||  || ||||||||||||       ||||||||||||||||||||| || ||||||||||||||||||||||||    
T  14234128 gctaattccctaactaactag-ttttgtaacaaattcttaactaactagctt-aggtggcagttatgaattatttct 14234054  T

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Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 29010809 - 29010927
Alignment:
Q  29 ataatagagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataagcaaaactaacacttgcttgtaacac 128  Q
    |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||  | |  |||||||||| |||    
T  29010809 ataatagaaagagcatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagccttt-tataggcaaatatgatgcttgcttgtagcac 29010907  T
Q  129 aagctatctcactaactaac 148  Q
    ||||||||||||||||||||    
T  29010908 aagctatctcactaactaac 29010927  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 29 - 207
Target Start/End: Complemental strand, 6962246 - 6962077
Alignment:
Q  29 ataatagagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataagcaaaactaacacttgcttgtaacac 128  Q
    ||||| |||| |||||||||||||||||||||||||||    ||   |||||||||||||||||||||||||| |||||| |||||||||||||||  ||    
T  6962246 ataatggagaaattatgcttgcaatgtgaatctcatta----gt---tgtacacattacaaagcctttatataggcaaaattaacacttgcttgtagaac 6962154  T
Q  129 aagctatctcactaactaactagnnnnnnnaacaaattcttaactaactaggttaaggtggcagttatgaattatttct 207  Q
    ||| |  ||  ||||||||||||       |||||| | | |||||||||  || ||||||||||||||||||||||||    
T  6962153 aagatgacttcctaactaactag-ttttgtaacaaaatttcaactaactaactt-aggtggcagttatgaattatttct 6962077  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 12635251 - 12635177
Alignment:
Q  73 gaatgtacacattacaaagcctttatataagcaaaactaacacttgcttgtaacacaagctatctcactaactaac 148  Q
    |||||||||||||||||||||||| |||| | |||  ||||||||||||||| || ||| ||||||||||||||||    
T  12635251 gaatgtacacattacaaagccttt-tataggaaaatataacacttgcttgtagcataagttatctcactaactaac 12635177  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 40498114 - 40498053
Alignment:
Q  35 gagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagccttt 96  Q
    |||| |||||| |||||||||||||||||||||||| | ||  | |||| ||||||||||||    
T  40498114 gagaaattatgtttgcaatgtgaatctcattaagaattaaagttgcacaatacaaagccttt 40498053  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 207
Target Start/End: Complemental strand, 8265942 - 8265817
Alignment:
Q  80 cacattacaaagcctttatataagcaaaactaacacttgcttgtaacacaagctatctcactaactaactagnnnnnnnaacaaattcttaactaactag 179  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||  |||||||| ||  ||||||||||||       |||||| ||| |||||||| |    
T  8265942 cacattacaaagcctttatataggcaaaactaacactttcttgtagaacaagctaacttcctaactaactag-ttttctaacaaaatctcaactaacttg 8265844  T
Q  180 gttaaggtggcagttatgaattatttct 207  Q
     || ||||||||||||||||||| ||||    
T  8265843 ctt-aggtggcagttatgaattaattct 8265817  T

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Target: scaffold0019 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 59463 - 59578
Alignment:
Q  31 aatagagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataagcaaaactaacacttgcttgtaacacaa 130  Q
    ||||||| |||||||||||||||||||||||||||||||  ||||  | |||| |||||||||||| |||| ||| || |  ||||||||||||  ||||    
T  59463 aatagagtgattatgcttgcaatgtgaatctcattaagacttgaagttgcacaatacaaagccttt-tataggcacaa-tggcacttgcttgtagaacaa 59560  T
Q  131 gctatctcactaactaac 148  Q
    ||||| | ||||||||||    
T  59561 gctatttaactaactaac 59578  T

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Target: scaffold1064 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 2206 - 2242
Alignment:
Q  31 aatagagagattatgcttgcaatgtgaatctcattaa 67  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  2206 aatatagagattatgcttacaatgtgaatctcattaa 2242  T

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