View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7956_high_1 (Length: 633)
Name: NF7956_high_1
Description: NF7956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7956_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 15 - 410
Target Start/End: Original strand, 4760190 - 4760584
Alignment:
| Q |
15 |
atgaaaataataatggatagaggtgaaagagagaaatttccttcttaattacatgactagatagaaagactgacacactgaagtgtcggtaacaatgaca |
114 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4760190 |
atgaaaataataatggatagaggtgaataaga--aatttccttcttaattacatgactagatagaaagactgacacactgaagtgtcggtaacaatgaca |
4760287 |
T |
|
| Q |
115 |
ataatagcaaggaaaaaacaataacaacttgaagcaattctattgcacttgaagaaagtagataacaatatcatagtacatatatnnnnnnngagtcagt |
214 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4760288 |
atagtagcaaggaaagaacaataacaacttgaagcaattctattgcacttgaagaaagtagataacaatatcatagtacatatataaaaaaagagtcagt |
4760387 |
T |
|
| Q |
215 |
cccatatattgaaa-ttaatttcaatgtgcagcatcttcttcctcacaaaattttgtgtactcctttgcacccaacaaggattctaattcagatggatca |
313 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4760388 |
cccatatattgaaaattaatttcaatgtgcagcatcttcttcctcacaaaattttgtgtactcctttgcacccaacaaggattctaattcagatggatca |
4760487 |
T |
|
| Q |
314 |
cttggctttattttgatcatccatccatcttcatatgggcttgagttgatcttcaagtcacaaaagtaataaaaataaataaataagtatgaacttg |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4760488 |
cttggctttattttgatcatccatccatcttcatatgggcttgagttgatcttcaagtcacaaaagtaataaaaataaataaataagtatgaacttg |
4760584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 410 - 618
Target Start/End: Original strand, 4760614 - 4760822
Alignment:
| Q |
410 |
gacattaaatgttgacttatttcataagtcatgacataaacatttgtgtaactatttgaggtaagttgttttcagcttattttcataaaaatacaccact |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4760614 |
gacattaaatgttgacttatttcataagtcatgacataaacatctgtgtaactatttgaggtaagttgttttcagcttattttcataaacatacaccact |
4760713 |
T |
|
| Q |
510 |
agttcacttatctctttagctttgcaaagtttcttattctctatttgattgtaaattaaaataacttattcataagctcttatattcaataagtacttaa |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4760714 |
agttcacttatctctttagctttgcaaagtttcttattctctatttgattgtaaattaaaataacttattcataagctcttatattcaataagtacttaa |
4760813 |
T |
|
| Q |
610 |
gtcattcct |
618 |
Q |
| |
|
||||||||| |
|
|
| T |
4760814 |
gtcattcct |
4760822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 470 - 498
Target Start/End: Original strand, 10272441 - 10272469
Alignment:
| Q |
470 |
gtaagttgttttcagcttattttcataaa |
498 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10272441 |
gtaagttgttttcagcttattttcataaa |
10272469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University