View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7956_high_16 (Length: 319)
Name: NF7956_high_16
Description: NF7956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7956_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 4313937 - 4314239
Alignment:
| Q |
1 |
ttcccaagattggatcaatgaacgtggtaaatgataaatgtcgagtcttggtaccaatatttgtttcatttctgagttcttctactctgtaatagaattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4313937 |
ttcccaagattggatcaatgaacgtggtaaatgataaatgtcgagtcttggtaccaatatttgtttcatttccgagttcttctactctgtaatagaattc |
4314036 |
T |
|
| Q |
101 |
tccaccaagcaatgtggccaaatcatgcactaggtcatgcatnnnnnnnctcttgttctcacttcctgaacattgaaaaaatgaccttgaaactaagtca |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4314037 |
tccaccaagcaatgtggccaaatcatgcaccaggtcatgcataacaaaactcttgttctcacttcctgaacattgaaaaaatgaccttgaaactaagtca |
4314136 |
T |
|
| Q |
201 |
ttaaaatattcattaccaacttcttctaaagtcttcccatttttaggagactttaaaagaccttcggccatccataacaagatcaaattgtctttacgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4314137 |
ttaaaatattcattaccaacttcttctaaagtcttcccatttttaggagactttaaaagatcttcggccatccataacaagatcaaattgtctttacgaa |
4314236 |
T |
|
| Q |
301 |
atg |
303 |
Q |
| |
|
||| |
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|
| T |
4314237 |
atg |
4314239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 288
Target Start/End: Complemental strand, 4254546 - 4254262
Alignment:
| Q |
4 |
ccaagattggatcaatgaacgtggtaaatgataaatgtcgagtcttggtaccaatatttgtttcatttctgagttcttctactctgtaatagaattctcc |
103 |
Q |
| |
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|||||||||||||| ||||| ||||||||||||| ||||| || |||||||| || ||||| || | || |||| | |||| ||||||||||||| |
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| T |
4254546 |
ccaagattggatcactgaactcactaaatgataaatgacgagtgttagtaccaatcttagtttctttcccaagctcttatgttctgaaatagaattctcc |
4254447 |
T |
|
| Q |
104 |
accaagcaatgtggccaaatcatgcactaggtcatgcatnnnnnnnctcttgttctcacttcctgaacattgaaaaaatgaccttgaaactaagtcatta |
203 |
Q |
| |
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| |||| ||||| || ||||||||||| || |||||||| |||| ||||||| | || |||| |||||||||||| || ||| ||||||||||| |
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| T |
4254446 |
atcaagaaatgttgctaaatcatgcaccagatcatgcatcacaaaactctggttctcattcccggaacgttgaaaaaatgatctagaagctaagtcatta |
4254347 |
T |
|
| Q |
204 |
aaatattcattaccaacttcttctaaagtcttcccatttttaggagactttaaaagaccttcggccatccataacaagatcaaat |
288 |
Q |
| |
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||||| ||| |||||||||||||||||| ||||||||||| | || |||||||| |||| || ||||| ||||||||||||| |
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| T |
4254346 |
aaatacccataaccaacttcttctaaagtattcccattttttgaaggtcttaaaagatcttcagctatccacaacaagatcaaat |
4254262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 168 - 285
Target Start/End: Complemental strand, 4247263 - 4247146
Alignment:
| Q |
168 |
gaacattgaaaaaatgaccttgaaactaagtcattaaaatattcattaccaacttcttctaaagtcttcccatttttaggagactttaaaagaccttcgg |
267 |
Q |
| |
|
|||| |||||||||||| | |||||||| |||||||||| |||||||||||| ||||||||||||| ||| |||| |||| || ||||||| |||| | |
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| T |
4247263 |
gaacgttgaaaaaatgatatggaaactaaatcattaaaatgatcattaccaactgcttctaaagtcttaccagtttttggaggctgtaaaagatcttctg |
4247164 |
T |
|
| Q |
268 |
ccatccataacaagatca |
285 |
Q |
| |
|
||||||| |||||||||| |
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| T |
4247163 |
ccatccacaacaagatca |
4247146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 7 - 302
Target Start/End: Complemental strand, 41933986 - 41933691
Alignment:
| Q |
7 |
agattggatcaatgaacgtggtaaatgataaatgtcgagtcttggtaccaatatttgtttcatttctgagttcttctactctgtaatagaattctccacc |
106 |
Q |
| |
|
||||||||||| |||| ||| ||||||||||||| ||||||||||||| ||| ||||||||||||| ||||||||| ||||||||||||||| ||||| |
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| T |
41933986 |
agattggatcagtgaatgtgctaaatgataaatgacgagtcttggtactaatctttgtttcatttccaagttcttctgttctgtaatagaattccccacc |
41933887 |
T |
|
| Q |
107 |
aagcaatgtggccaaatcatgcactaggtcatgcatnnnnnnnctcttgttctcacttcctgaacattgaaaaaatgaccttgaaactaagtcattaaaa |
206 |
Q |
| |
|
||||| ||||| ||||| |||||||| |||||||| || ||||||||| |||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
41933886 |
gagcaacgtggctaaatcgtgcactagatcatgcatcacaaaacttttgttctcatttccagaacattgaaaaaatgaccttgaagctaagtcattaaaa |
41933787 |
T |
|
| Q |
207 |
tattcattaccaacttcttctaaagtcttcccatttttaggagactttaaaagaccttcggccatccataacaagatcaaattgtctttacgaaat |
302 |
Q |
| |
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||||||||||||||||||||||||||| ||||| || | || || ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41933786 |
tattcattaccaacttcttctaaagtcatcccacttcttttaggctgtaaaagaccttcggccatccataacaagatcaaattgtctttatgaaat |
41933691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 31 - 296
Target Start/End: Original strand, 34802043 - 34802308
Alignment:
| Q |
31 |
atgataaatgtcgagtcttggtaccaatatttgtttcatttctgagttcttctactctgtaatagaattctccaccaagcaatgtggccaaatcatgcac |
130 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||||| || | |||||||| ||| ||||||| |||||||| | ||| || || ||||||||||| |
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| T |
34802043 |
atgataagtgacgagtcttggtaccaatctttgtttctttccctagttcttccgttctaaaatagaactctccacctatcaacgttgctaaatcatgcac |
34802142 |
T |
|
| Q |
131 |
taggtcatgcatnnnnnnnctcttgttctcacttcctgaacattgaaaaaatgaccttgaaactaagtcattaaaatattcattaccaacttcttctaaa |
230 |
Q |
| |
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||| |||||||| |||| ||| |||| || |||| ||||||||||| |||||| |||||||||||||||| ||| || ||||||||||||| |
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| T |
34802143 |
tagatcatgcatcacaaaactctcattcccactcccagaacgatgaaaaaatgatcttgaagctaagtcattaaaatacccataactaacttcttctaaa |
34802242 |
T |
|
| Q |
231 |
gtcttcccatttttaggagactttaaaagaccttcggccatccataacaagatcaaattgtcttta |
296 |
Q |
| |
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||||||||| ||| |||| || ||||||| |||| |||||||||||||||||||||| ||||||| |
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| T |
34802243 |
gtcttcccaatttccggaggctgtaaaagatcttcagccatccataacaagatcaaatcgtcttta |
34802308 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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