View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7956_high_25 (Length: 230)
Name: NF7956_high_25
Description: NF7956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7956_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 50732759 - 50732564
Alignment:
| Q |
19 |
gtgaaggctgtgaagtcgtctaccgatcataatttttactttggtttggtgattaaagtcttagttgtttgctttcttcatttttagtttttcatgtatg |
118 |
Q |
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| T |
50732759 |
gtgaagactatgaagtcgtctaccgatgataatttttactttggtttggtgattaaaatcttagttgtttgctttcttcatttttagtttttcatgtatg |
50732660 |
T |
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| Q |
119 |
aagagttgataatgatgttgcttatgctctagctaagtttgctttagtttcaattgattcggtttgaactgaggaaatttctcttctgttggttat |
214 |
Q |
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| T |
50732659 |
aagagttgataatgatgttgctcatgctctagctaagtttgctttagtttcaattgattcggtttggattgaggaaattcctcttttgttggttat |
50732564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 50780096 - 50780291
Alignment:
| Q |
19 |
gtgaaggctgtgaagtcgtctaccgatcataatttttactttggtttggtgattaaagtcttagttgtttgctttcttcatttttagtttttcatgtatg |
118 |
Q |
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| T |
50780096 |
gtgaagactatgaagtcgtctaccgatgataatttttactttggtttggtgattaaaatcttagttgtttgctttcttcatttttagtttttcatgtatg |
50780195 |
T |
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| Q |
119 |
aagagttgataatgatgttgcttatgctctagctaagtttgctttagtttcaattgattcggtttgaactgaggaaatttctcttctgttggttat |
214 |
Q |
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| T |
50780196 |
aagagttgataatgatgttgctcatgctctagctaagtttgctttagtttcaattgattcggtttggattgaggaaattcctcttttgttggttat |
50780291 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 75 - 201
Target Start/End: Complemental strand, 5538477 - 5538352
Alignment:
| Q |
75 |
agtcttagttgtttgctttcttcatttttagtttttcatgtatgaagagttgataatgatgttgcttatgctctagctaagtttgctttagtttcaattg |
174 |
Q |
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|||||||| |||||| ||||||| |||||||||| |||||| ||||||||| ||| | | ||||| || ||||||||||||||||||||||||||||| |
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| T |
5538477 |
agtcttagatgtttgttttcttcgtttttagtttctcatgtgcgaagagttg-taacgttattgctcattatctagctaagtttgctttagtttcaattg |
5538379 |
T |
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| Q |
175 |
attcggtttgaactgaggaaatttctc |
201 |
Q |
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||| ||||| | |||||||| ||||| |
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| T |
5538378 |
attttgtttggattgaggaaaattctc |
5538352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 197
Target Start/End: Complemental strand, 26194928 - 26194807
Alignment:
| Q |
75 |
agtcttagttgtttgctttcttcatttttagtttttcatgtatgaagagttgataatgatgttgcttatgctctagctaagtttgctttagtttcaattg |
174 |
Q |
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||||||||||||| |||||||||||||||||| ||||| ||||||||| ||| | ||||||| ||| |||||||||||||||||||||| |||| |
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| T |
26194928 |
agtcttagttgttaattttcttcatttttagtttctcatgcgcgaagagttggtaa-gttgttgctcatgatctagctaagtttgctttagttctgattg |
26194830 |
T |
|
| Q |
175 |
attcggtttgaactgaggaaatt |
197 |
Q |
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|||| |||| | |||||||||| |
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| T |
26194829 |
attctatttggattgaggaaatt |
26194807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 165
Target Start/End: Complemental strand, 18927353 - 18927263
Alignment:
| Q |
75 |
agtcttagttgtttgctttcttcatttttagtttttcatgtatgaagagttgataatgatgttgcttatgctctagctaagtttgctttag |
165 |
Q |
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||||||||||||||| ||||||| |||||||||| |||||| |||||| || ||| | ||||| ||||| ||||||||||||| |||| |
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| T |
18927353 |
agtcttagttgtttgttttcttcttttttagtttctcatgtgcgaagaggtggtaactctattgctcatgctttagctaagtttgccttag |
18927263 |
T |
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