View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7956_high_3 (Length: 553)
Name: NF7956_high_3
Description: NF7956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7956_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 30 - 231
Target Start/End: Complemental strand, 17026010 - 17025809
Alignment:
| Q |
30 |
atgagaagatgctatagaataaacagaatagaatctcgaagttatgtgaatattctaaaaccatttatgggtattattgaaatcgccaattggatttgaa |
129 |
Q |
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| T |
17026010 |
atgagaagatgctatagaataaacagaatagaatctcgaaggtatgtgaatattctaaaaccatttatgggtattattgaaatcgccaattggatttgac |
17025911 |
T |
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| Q |
130 |
gtccaaatcttaacgatgagtcaaaattctattgaaaaaagctaacatgtgttctaagacacaagttaatttatgggtattattgtaatcaatgcatttg |
229 |
Q |
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| T |
17025910 |
gtccaaatcttaacgatgagtcaaaattctattgaaaaaagctaacatgtgttctaagacacaagttaatttatgggtattattgtaatcaatgcatttg |
17025811 |
T |
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| Q |
230 |
aa |
231 |
Q |
| |
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|| |
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| T |
17025810 |
aa |
17025809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 286 - 535
Target Start/End: Complemental strand, 17025625 - 17025389
Alignment:
| Q |
286 |
tattttagtactttaaaggcacaacttagcatgagcaattatataatatgaattactacatcaaa-tgaacctggacgaaacattgaaccaaagggaaat |
384 |
Q |
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| T |
17025625 |
tattttagtatgttaagggcacaacttagcatgagcaattatataatatgaattactacatcaaaatgaacctggacgaaacattgaaccaaagggaaat |
17025526 |
T |
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| Q |
385 |
gagacattccaacatcgagtagccacattatgttcttccatacatgtttaaagatgcaaatatcacgcaagtgttaaatggaatcaaatatgtttgggac |
484 |
Q |
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| T |
17025525 |
gagacattccaacatcgagtagccacattatgttcttcc--------------atgcaaatatcacgcaagtgtcaaatggaatcaaatacgtttaggac |
17025440 |
T |
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| Q |
485 |
cttttcttagattttgaaaattttaagcactttacagttatgggacatcac |
535 |
Q |
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| T |
17025439 |
cttttcttagattttgaaaattttaagcactttacagttatgggacatcac |
17025389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 322 - 535
Target Start/End: Complemental strand, 17003187 - 17002988
Alignment:
| Q |
322 |
aattatataatatgaattactacatcaaatgaacctggacgaaacattgaaccaaagggaaatgagacattccaacatcgagtagccacattatgttctt |
421 |
Q |
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| T |
17003187 |
aattatataatatgaattactatatcaaatgaacctggacgaaacattgaaccaaagggaaatgagacattccaacatcgagtagccacattatgttctt |
17003088 |
T |
|
| Q |
422 |
ccatacatgtttaaagatgcaaatatcacgcaagtgttaaatggaatcaaatatgtttgggaccttttcttagattttgaaaattttaagcactttacag |
521 |
Q |
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| T |
17003087 |
cc--------------atgcaaatatcacgcaagtgtcaaatggaatcaaatatgtttgggaccttttcttagattttgaaaattttaagcactttaccg |
17003002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 17003401 - 17003257
Alignment:
| Q |
18 |
atacaattgagcatgagaagatgctatagaataaacagaatagaatctcgaagttatgtgaatattctaaaaccatttatgggtattattgaaatcgcca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||||||| || |||||||| ||||||||||| |
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| T |
17003401 |
atacaattgagcatgagaagatgctatagaataaactgaatagaatctcgaaggtgtgtgaatattctgaaaccatatacgggtattaatgaaatcgcca |
17003302 |
T |
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| Q |
118 |
attggatttgaagtccaaatcttaacgatgagtcaaaattctatt |
162 |
Q |
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|||||| | ||||||||||||||| | ||| | ||||||||||| |
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| T |
17003301 |
attggaatcaaagtccaaatcttaaagttgaatgaaaattctatt |
17003257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 351 - 388
Target Start/End: Complemental strand, 16995363 - 16995326
Alignment:
| Q |
351 |
tgaacctggacgaaacattgaaccaaagggaaatgaga |
388 |
Q |
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| T |
16995363 |
tgaacctggacgaaacattgaacaaaagggaaatgaga |
16995326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 284
Target Start/End: Complemental strand, 17025790 - 17025756
Alignment:
| Q |
250 |
gattatttgaatgcataaaatttaagaaaatattt |
284 |
Q |
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||||||||||||||| ||||||||||||||||||| |
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| T |
17025790 |
gattatttgaatgcacaaaatttaagaaaatattt |
17025756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 30784297 - 30784261
Alignment:
| Q |
251 |
attatttgaatgcataaaatttaagaaaatatttcta |
287 |
Q |
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|||| |||||||||||||||||||||||| ||||||| |
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| T |
30784297 |
attaattgaatgcataaaatttaagaaaaaatttcta |
30784261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 250 - 291
Target Start/End: Complemental strand, 22651146 - 22651105
Alignment:
| Q |
250 |
gattatttgaatgcataaaatttaagaaaatatttctatttt |
291 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
22651146 |
gattaattgaatgcataaaatttaagagaatatttctatttt |
22651105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 50685674 - 50685714
Alignment:
| Q |
251 |
attatttgaatgcataaaatttaagaaaatatttctatttt |
291 |
Q |
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|||| ||||||||| |||||| ||||||||||||||||||| |
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| T |
50685674 |
attaattgaatgcacaaaattcaagaaaatatttctatttt |
50685714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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