View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7956_high_4 (Length: 539)
Name: NF7956_high_4
Description: NF7956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7956_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 79 - 524
Target Start/End: Complemental strand, 43935721 - 43935273
Alignment:
| Q |
79 |
attcacttgagtttttaccacaaattagaagtgtatcccaacaatttataattattttctctcctttnnnnnnngtaaattatttcctctnnnnnnntta |
178 |
Q |
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| T |
43935721 |
attcacttgagtttttaccacaaattagaagtgtatcccaacaatttataattattttctctcctttaaaaaaagtaaattatttcctctaaaaaaatta |
43935622 |
T |
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| Q |
179 |
taattaaggagagaa-----gtttatgttgggttttggtctagtccgctcaaatttgtatcttcttttatcttttcgtattattggataaattttataag |
273 |
Q |
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| T |
43935621 |
taattaaggagagaaaattagtttatgttgggttttggtctaatccgctcaaatttgtatcttcttttatcttttcgtattattggataaattttataag |
43935522 |
T |
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| Q |
274 |
atattgcaaatgaaaggtgataggcttggggatcagcatagactcgttgtcttgctctgtcacatgtttcttagcactttatttgttttgtttagaagaa |
373 |
Q |
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| T |
43935521 |
atattgcaaatgaaaggtgataggcttggggatcagcatagactcgttgtcttgctctgtcacatgtttcttagcactttatttgttttgtttagaagaa |
43935422 |
T |
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| Q |
374 |
aaggtgaattcaacatccttaccatagatgttgttctccttttatatatcaatcccttgttagggttttatgtggttcctgagcctcccaatacttgatt |
473 |
Q |
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| T |
43935421 |
aaagtgaattcaacatccttaccatagatgttgttctcctttt--atatcaatcccttgttagggttttatgtggttcctgagcctcccaataattgatt |
43935324 |
T |
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| Q |
474 |
aatccaaaactaaataggttatgagttcaggcgaacattttatttattcat |
524 |
Q |
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| T |
43935323 |
gatccaaaactaaatatgttatgagttcaggcgaacattttatttattcat |
43935273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 43935809 - 43935740
Alignment:
| Q |
14 |
atattggttattgcatttgtagatatatagattgacatagagaacacttgtacacatctttctccattca |
83 |
Q |
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| T |
43935809 |
atattggttattgcatttgtagatatatagattgacatagagaacacttgtacacatctttctccattca |
43935740 |
T |
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