View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7956_low_10 (Length: 426)
Name: NF7956_low_10
Description: NF7956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7956_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 184 - 377
Target Start/End: Original strand, 35232556 - 35232748
Alignment:
| Q |
184 |
gtattatttaaatgaaaaaacaaaactaaatctgtctctaaagaaaccttatagagaacaactgggtaagtgatcccaccagattaaaccaatagcaaag |
283 |
Q |
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| T |
35232556 |
gtattatttaaatgaaaaaacaaaactaaatatgtctctaaagaaaccttatatagaacaactaggtaagtgatcccaccagactaaaccatcagcaaag |
35232655 |
T |
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| Q |
284 |
aagacaacatatgttagtttgtctgtccaagtatccccttctctataaatatgagaaaatctaaagcggaaaatccaaatgttatgaagccaat |
377 |
Q |
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| T |
35232656 |
aagacaacacatgttagtttg-ctgtccaagtatccccttctctataaatatgagaaaatctaaagcggaaaatcctaatgttatgaagccaat |
35232748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 24 - 186
Target Start/End: Original strand, 35232122 - 35232283
Alignment:
| Q |
24 |
tgttgctatgccaaaggataagagttaagcgatttcgaaatgattaaatataatgnnnnnnnnaagaaaaattgaagatgattgcatcatggtaacatct |
123 |
Q |
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| T |
35232122 |
tgttgctatgccaa-ggataagagtttagcgatttcgaaatgattaaatataatgttttttttaagaaaaattgaagatgattgcatcatggtaacatct |
35232220 |
T |
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| Q |
124 |
tgacattttaactatgttggcatctcaatgcaccttcaatcttatatgatctctccaaaggta |
186 |
Q |
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| T |
35232221 |
tgacattttaattatgttggcatcccaatgcaccttcaatcttatatgatctctccaaaggta |
35232283 |
T |
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