View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7956_low_11 (Length: 418)
Name: NF7956_low_11
Description: NF7956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7956_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 29016275 - 29016660
Alignment:
| Q |
18 |
aaaatgagttctgtttgtatatcaaattgtgtgaacgatgcacgtgatccacgcgtgccagttcgagccacatacacaaacctctacaagtggccggaat |
117 |
Q |
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| T |
29016275 |
aaaatgagttctgtttgtatatcaaattgtgtgaacgatgcacgtgatccacgcgtgccagttcgagccacatacacaaacctctacaagtggccagaat |
29016374 |
T |
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| Q |
118 |
cagatgctgagtttgtgagatcggtgagcttaaacggaagaaaaggatcatctgatcatccaagggtggtggatagcatttcatgcagacagatgtatct |
217 |
Q |
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| T |
29016375 |
cagatgctgagtttgtgagatcggtgagcttaaacggaagaaaaggatcatctgatcatccaagggtggtggatagcatttcatgcagacagatgtatct |
29016474 |
T |
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| Q |
218 |
aaggagctatacattttccagagaagaagaaaaaacccaaaaatgttttggtagggtgagagagaaagtggatcatgatggaaagaagaaaagaaatcaa |
317 |
Q |
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| T |
29016475 |
aaggagctatacattttccagagaagaagaaaaaacccaaaaatgttttggtagggtgagagagaaagtggatcatgatggaaagaagaaaagaaatcaa |
29016574 |
T |
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| Q |
318 |
agtagaagaaggaataagtgtttggttttaagtaaaatgaaggaaatttcttgtaatactttgtttcggatgtttcataagttctt |
403 |
Q |
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| T |
29016575 |
agtagaagaaggaataagtgtttggttttaagtaaaatgaaggaaatttcttgtaatactttgtttcggatgtttcataagttctt |
29016660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 40399935 - 40400048
Alignment:
| Q |
32 |
ttgtatatcaaattgtgtgaacgatgcacgtgatccacgcgtgccagttcgagccacatacacaaacctctacaagtggccggaatcagatgctgagttt |
131 |
Q |
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| T |
40399935 |
ttgtatatcaaattgtatcaacgacgcacgagacccacgagtcccagtgagagccagctatgtgaacctctacaagtggccggaatcagacgctgcgttt |
40400034 |
T |
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| Q |
132 |
gtgagatcggtgag |
145 |
Q |
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| T |
40400035 |
gtgaggtcagtgag |
40400048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 40400077 - 40400153
Alignment:
| Q |
174 |
catccaagggtggtggatagcatttcatgcagacagatgtatctaaggagctatacattttccagagaagaagaaaa |
250 |
Q |
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| T |
40400077 |
catccaagggtggtggacagcatctcctgcagacaactgtatctgagaagctacacattttgcagagacgatgaaaa |
40400153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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