View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7956_low_12 (Length: 410)
Name: NF7956_low_12
Description: NF7956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7956_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 20 - 398
Target Start/End: Complemental strand, 39809161 - 39808783
Alignment:
| Q |
20 |
cctttgctgctcttcaacggtggtagaagcgccaccaccggtggatagtatagcctcaaggtagccattaatccactcattaccagccattaatctcaac |
119 |
Q |
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| T |
39809161 |
cctttgctgctcttcaacggtggtagaagcaccaccaccggtggatagtatagcctcaaggtagccattaatccactcattaccagccattaatctcaac |
39809062 |
T |
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| Q |
120 |
ctttctttgtattatatatgtaatgtaaaactactatacagtttacaatattcttaaactcaagtactcattctaatatgaagtatgtttcttgaatgtt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39809061 |
ctttctttgtattatatatgtaatgtaaaactactatacagtttacaatattcttaaactcaagtactcattctaatatgaagtatgtttcttgaatgtt |
39808962 |
T |
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| Q |
220 |
acatgatcaacatggcttatctttatgtaatgttttgtgtgcagtgttagagaaccacatgcaatgaacgatgtatattgctcatttttggttcaaattt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39808961 |
acatgatcaacatggcttatctttatgtaatgttttgtgtgcagtgttagagaaccacatgcaatgaacgatgtatattgctcatttttggttcaaattt |
39808862 |
T |
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| Q |
320 |
gtgtgttgtgtattgtattgtcttttgtgttagttagttaggcaccgaatataattaacattattccttattcttctca |
398 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39808861 |
gtgtgttgtgtattgtgttgtcttttgtgttagttagttaggcaccgaatataattaacattattccttattcttctca |
39808783 |
T |
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