View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7956_low_13 (Length: 393)
Name: NF7956_low_13
Description: NF7956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7956_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 39 - 375
Target Start/End: Complemental strand, 40003932 - 40003596
Alignment:
| Q |
39 |
ttagcatgattgtaatattttnnnnnnngtttaaattacctcattgtaagcaaaccgaggatagggcaggggcagcaacatggccagaacagaagctata |
138 |
Q |
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| T |
40003932 |
ttagcatgattgtaatattttaaaaaaagtttaaattacctcattgtaagcaaaccgaggatagggcaggggcagcaacatggccagaacagaagctata |
40003833 |
T |
|
| Q |
139 |
gctccaagtgcagtggaacaagccacatgaattgaatgcgtagccactccttcttgagcaccatgtataactgtgctcacatatactatcactagctgtc |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40003832 |
gctccaagtgcagtggaacaagccacatgaattgaatgcgtagccactccttcttgagcaccatgtataactgtgctcacatatactatcacaagctgtc |
40003733 |
T |
|
| Q |
239 |
catatgcaatccttttagtcaacaagtgtgtcgatttgggcagcgccaccacaaatgcaccggtagccacggctagcgcagccatacagttgctgaagtt |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40003732 |
catatgcaatccttttagtcaacaagtgtgtcgatttgggcagcgccaccacaaatgcaccggtagccacggctagcgcagccatacagttgctgaagtt |
40003633 |
T |
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| Q |
339 |
atcgggtcttataacttgcaagctaagtagagaaaaa |
375 |
Q |
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| T |
40003632 |
atcgggtcttataacttgcaagctaagtagagaaaaa |
40003596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 131 - 375
Target Start/End: Original strand, 22940098 - 22940342
Alignment:
| Q |
131 |
aagctatagctccaagtgcagtggaacaagccacatgaattgaatgcgtagccactccttcttgagcaccatgtataactgtgctcacatatactatcac |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22940098 |
aagctatagctccaagtgcagtggaacaagccacatgaattgaatgcgtagccactccttcttgaggaccatgtataactgtgctcacatatactatcac |
22940197 |
T |
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| Q |
231 |
tagctgtccatatgcaatccttttagtcaacaagtgtgtcgatttgggcagcgccaccacaaatgcaccggtagccacggctagcgcagccatacagttg |
330 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22940198 |
aagatgtccatatgcaatccttttagtcaacaagtgtgtcgatttgggcagcgccaccacaaatgcaccggtagccacggctagcgcagccatacagttg |
22940297 |
T |
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| Q |
331 |
ctgaagttatcgggtcttataacttgcaagctaagtagagaaaaa |
375 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
22940298 |
ctgaagttatcgagtcttataacttgcaagctaattagagaaaaa |
22940342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 127 - 375
Target Start/End: Complemental strand, 27287979 - 27287731
Alignment:
| Q |
127 |
acagaagctatagctccaagtgcagtggaacaagccacatgaattgaatgcgtagccactccttcttgagcaccatgtataactgtgctcacatatacta |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
27287979 |
acagaagctatagctccaagtgcagtggaacaagccacatgaattgaatgtgtagccactccttcttgaggaccatgtataactgttctcacatatacta |
27287880 |
T |
|
| Q |
227 |
tcactagctgtccatatgcaatccttttagtcaacaagtgtgtcgatttgggcagcgccaccacaaatgcaccggtagccacggctagcgcagccataca |
326 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27287879 |
tcacaagttgtccatatgcaatccttttagtcaacaagtgtgtcgatttgggcagcgccaccacaaatgcaccggtagccacggctagcgcagccataca |
27287780 |
T |
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| Q |
327 |
gttgctgaagttatcgggtcttataacttgcaagctaagtagagaaaaa |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27287779 |
gttgctgaagttatcgggtcttataacttgcaagctaattagagaaaaa |
27287731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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