View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7956_low_14 (Length: 379)
Name: NF7956_low_14
Description: NF7956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7956_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 3094334 - 3094680
Alignment:
| Q |
18 |
gttgatagtgattataaggttgctggtgtccacgcattgcgcgtaatcgacggttctacctttaatcattctcctggaactaatcctcaagccactgtta |
117 |
Q |
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| T |
3094334 |
gttgatagtgattataaggttgctggtgtccacgcattgcgcgtaatcgacggttctacctttaatcattctcctggaactaatcctcaagccactgtta |
3094433 |
T |
|
| Q |
118 |
tgatgcttggaaggtaaaatatacacttagtatatgcatatgaatttcatttatgtgtgacaatgtgtgtacattgttgaaattgctcctttatcttgtg |
217 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094434 |
tgatgcttggaaggtaaaatatacagttagtatatgcatatgaatttcatttgtgtgtgacaatgtgtgtacattgttgaaattgctcctttatcttgtg |
3094533 |
T |
|
| Q |
218 |
ttttcagatatcttatggtatttgattttttattaatttggagtgcaggtatatgggagtcaaaatattgagagagagatttgctgctgatgaaaccact |
317 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3094534 |
ttttcagatatcttatggtacttgattttttattaatttggagtgcaggtatatgggagtcaaaatattgagagagagatttgctgatgatgaaaccact |
3094633 |
T |
|
| Q |
318 |
taacattgtataaataaatttaacatatgatttttatctattgatgt |
364 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094634 |
taatattgtataaataaatttaacatatgatttttatctattgatgt |
3094680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 3085488 - 3085812
Alignment:
| Q |
18 |
gttgatagtgattataaggttgctggtgtccacgcattgcgcgtaatcgacggttctacctttaatcattctcctggaactaatcctcaagccactgtta |
117 |
Q |
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||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | | |
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| T |
3085488 |
gttgataatgattataaggttcttggtgtcgatgcattgcgcgtaatcgacggttctaccttcaactattctcctggaactaatcctcaagccactctca |
3085587 |
T |
|
| Q |
118 |
tgatgcttggaaggtaaaatatacacttagtatatgcatatgaatttcatttatgtgtgacaatgtgtgtacattgttgaaattgctcctttatcttgtg |
217 |
Q |
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||||||||||||||||||||||| | ||||| ||||||||| ||||| |||| ||||| ||||||||||||||||| |||||||| ||||| |||||||| |
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| T |
3085588 |
tgatgcttggaaggtaaaatatatagttagtctatgcatataaatttaatttgtgtgttacaatgtgtgtacattggtgaaattgttccttaatcttgtg |
3085687 |
T |
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| Q |
218 |
ttttcagatatcttatggtatttga--ttttttattaatttggagtgcaggtatatgggagtcaaaatattgagagagagatttgctgctgatgaaacca |
315 |
Q |
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||||| ||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
3085688 |
atttcatatatcttatggtacttgaatttttttattaatttggtgtgcaggtatatgggagtcagaatattgagagagagacttgctgctgatgaaacca |
3085787 |
T |
|
| Q |
316 |
cttaacattgtataaataaatttaa |
340 |
Q |
| |
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|||| ||||||| |||||||||| |
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| T |
3085788 |
attaatattgtattgataaatttaa |
3085812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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