View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7956_low_15 (Length: 357)
Name: NF7956_low_15
Description: NF7956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7956_low_15 |
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| [»] scaffold0144 (2 HSPs) |
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| [»] scaffold0133 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 16871784 - 16871438
Alignment:
| Q |
1 |
ttatagatgtgtaaattggagaatcaatattagtataatacatagtacagaagttgagatggttagtgcagaattatgtacaaacctgctggcgtacgtg |
100 |
Q |
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| T |
16871784 |
ttatagatgtgtaaattggagaatcaatattagtataatacatagtacataagttgagatggttagtgcagaattatgtacaaacctgcaggtgtacgcg |
16871685 |
T |
|
| Q |
101 |
ttggggaaaatatctttgctactacaaattgataaattcactgaataacaatgattttattgatgaaactctaaagaaaatggtctcaaacagacattga |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16871684 |
ttggggaaaatacctttgctactacaaattgataaattcactgaataacaacgattttattgatgaaactctaaagaaaatggtctcaaacagacattga |
16871585 |
T |
|
| Q |
201 |
atacaagcatttacactg-----ctgcataattgaaattattacaaagaaaacagacacag---tttcactaagtttcgagagctcggttctctcccatc |
292 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
16871584 |
atacaagcatttacactgctgcgctgcataattgaaa-tattacaaagaaaacagacacagtactgtcactaagtttcgagagctcggttctctcccatc |
16871486 |
T |
|
| Q |
293 |
taaatcactactcaataaccttacaaaccaatacttgtgttaaaaagt |
340 |
Q |
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| T |
16871485 |
taaatcactactcaataaccttacaaaccaatacttgtgttaaaaagt |
16871438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 108 - 340
Target Start/End: Original strand, 16654596 - 16654827
Alignment:
| Q |
108 |
aaatatctttgctactacaaattgataaattcactgaataacaatgattttattgatgaaactctaaagaaaatggtctcaaacagacattgaatacaag |
207 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| |
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| T |
16654596 |
aaatatctttgctactacaaattgataagttcactgaataacaatgattttattgatgaaactctaaagaaattggtctcaaacggacaatgaatacaaa |
16654695 |
T |
|
| Q |
208 |
catttacactgctgcataattgaaattattacaaagaaaacagacacagtttcactaagtttcgagagctcggttctctcccatctaaatcactactcaa |
307 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| || |
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| T |
16654696 |
catttacactgctgcataattgaaa-tattacatagaaaacagacatggtttcactaagtttcgagagcttggttctctcccatccaaatcactacccag |
16654794 |
T |
|
| Q |
308 |
taaccttacaaaccaatacttgtgttaaaaagt |
340 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
16654795 |
taaccttacaaaccaatacttgtgttaaaaagt |
16654827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 126 - 291
Target Start/End: Original strand, 16734470 - 16734634
Alignment:
| Q |
126 |
aaattgataaattcactgaataacaatgattttattgatgaaactctaaagaaaatggtctcaaacagaca-ttgaatacaagcatttacactgctgcat |
224 |
Q |
| |
|
||||||||||||| | | |||||||| |||||||||||||||||| ||| ||| | || ||||||||| | |||||||||| |||||||||||||| | |
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| T |
16734470 |
aaattgataaattgatt-aataacaacaattttattgatgaaactcaaaaaaaagttgtatcaaacagaaaattgaatacaaacatttacactgctgtag |
16734568 |
T |
|
| Q |
225 |
aattgaaattattacaaagaaaacagacacagtttcactaagtttcgagagctcggttctctcccat |
291 |
Q |
| |
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|||| |||| ||| || ||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
16734569 |
aattaaaat-atttcatagaaaacagacacagtttcactaagtttcgaaagcttggttctctcccat |
16734634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 51 - 289
Target Start/End: Complemental strand, 16770293 - 16770070
Alignment:
| Q |
51 |
aagttgagatggttagtgcagaattatgtacaa---acctgctggcgtacgtgttggggaaaatatctttgctactacaaattgataaattcactgaata |
147 |
Q |
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||||||||||| |||||||||||| ||| |||| ||||||| ||||||| || | | ||||||||||||||| || |||||||||||||||| ||||| |
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| T |
16770293 |
aagttgagatgcttagtgcagaatcatgcacaacaaacctgcttgcgtacgcgtagagaaaaatatctttgctagtagaaattgataaattcaccgaata |
16770194 |
T |
|
| Q |
148 |
acaatgattttattgatgaaactctaaagaaaatggtctcaaacagacattgaatacaagcatttacactgctgcataattgaaattattacaaagaaaa |
247 |
Q |
| |
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|||| ||||||||||||||||||| || |||| | || ||||| |||||||||||||||| |||| ||| |||| || |||||| |
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| T |
16770193 |
acaacgattttattgatgaaactcaaacgaaagttgtatcaaa-----------------catttacactgctgcagaatt-aaaatatttcatagaaaa |
16770112 |
T |
|
| Q |
248 |
cagacacagtttcactaagtttcgagagctcggttctctccc |
289 |
Q |
| |
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||||||||||||||| ||||||| |||||| |||||| |||| |
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| T |
16770111 |
cagacacagtttcacaaagtttctagagcttggttctttccc |
16770070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 291
Target Start/End: Original strand, 16772283 - 16772364
Alignment:
| Q |
208 |
catttacactgctgcataattgaaattattacaaagaaaacagacacagtttcactaagtttcgagagctcggttctctcccat |
291 |
Q |
| |
|
|||||||||||||||| |||| |||| ||| || |||||||||||||| ||| | |||||||||||||| ||||||||||||| |
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| T |
16772283 |
catttacactgctgcagaattaaaat-atttcatagaaaacagacacattttg-caaagtttcgagagcttggttctctcccat |
16772364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 16784048 - 16784124
Alignment:
| Q |
37 |
aatacatagtacagaagttgagatggttagtgcagaattatgtacaaacctgctggcgtacgtgttggggaaaatat |
113 |
Q |
| |
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||||||||||| | || |||||| ||||| |||||||| ||||||||||||| | ||||| | || ||||||||||| |
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| T |
16784048 |
aatacatagtataaaaattgagacggttattgcagaatcatgtacaaacctgtttgcgtaggcgtgggggaaaatat |
16784124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 107 - 291
Target Start/End: Complemental strand, 4924 - 4741
Alignment:
| Q |
107 |
aaaatatctttgctactacaaattgataaattcactgaataacaatgattttattgatgaaactctaaagaaaatggtctcaaacagacattgaatacaa |
206 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||| ||||||| | | ||||||||| ||||||||||| |
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|
| T |
4924 |
aaaatatctttgctggtacaaattgataaattcactgaataataacgattttattgatgaaactcaaaagaaagttgaatcaaacagagattgaatacaa |
4825 |
T |
|
| Q |
207 |
gcatttacactgctgcataattgaaattattacaaagaaaacagacacagtttcactaagtttcgagagctcggttctctcccat |
291 |
Q |
| |
|
|||||||||||||||| |||| ||| |||| || ||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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|
| T |
4824 |
acatttacactgctgcagaatt-aaaatatttcatagaaaacagacgcagtttcactaagtttcgagagcttggttctctcccat |
4741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 105 - 260
Target Start/End: Original strand, 6759 - 6913
Alignment:
| Q |
105 |
ggaaaatatctttgctactacaaattgataaattcactgaataacaatgattttattgatgaaactctaaagaaaatggtctcaaacagaca-ttgaata |
203 |
Q |
| |
|
|||||||||||||| || | ||||||||||||| | | |||||||| ||||||| ||||||||| ||||||| | || ||||||||| | ||||||| |
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|
| T |
6759 |
ggaaaatatctttggtagtggaaattgataaattgatt-aataacaacaattttatcaatgaaactccaaagaaagttgtatcaaacagaaaattgaata |
6857 |
T |
|
| Q |
204 |
caagcatttacactgctgcataattgaaattattacaaagaaaacagacacagtttc |
260 |
Q |
| |
|
||| |||||||||||||| | |||| ||| |||| || ||||||||||||||||||| |
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|
| T |
6858 |
caaacatttacactgctgtagaatt-aaaatatttcatagaaaacagacacagtttc |
6913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 80 - 290
Target Start/End: Original strand, 15169 - 15377
Alignment:
| Q |
80 |
acaaacctgctggcgtacgtgttggggaaaatatctttgctactacaaattgataaattcactgaataacaatgattttattgatgaaactctaaagaaa |
179 |
Q |
| |
|
||||||||||| |||||| || |||||||||||||||| || | ||||||||||||||| | |||||||| ||||||| | ||||||| ||||||| |
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|
| T |
15169 |
acaaacctgcttccgtacgcgt-ggggaaaatatctttggtagtggaaattgataaattcatt-aataacaacaattttatcaaggaaactcaaaagaaa |
15266 |
T |
|
| Q |
180 |
atggtctcaaacagaca-ttgaatacaagcatttacactgctgcataattgaaattattacaaagaaaacagacacagtttcactaagtttcgagagctc |
278 |
Q |
| |
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| || ||||||||| | |||||||||| |||||||||||||| | |||| |||| ||| || |||||||||||||||||||||||||||||||||||| |
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|
| T |
15267 |
gttgtatcaaacagaaaattgaatacaaacatttacactgctgtagaattaaaat-atttcatagaaaacagacacagtttcactaagtttcgagagctt |
15365 |
T |
|
| Q |
279 |
ggttctctccca |
290 |
Q |
| |
|
|||||||||||| |
|
|
| T |
15366 |
ggttctctccca |
15377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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