View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7956_low_17 (Length: 306)
Name: NF7956_low_17
Description: NF7956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7956_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 38817809 - 38818095
Alignment:
| Q |
1 |
gacatgaggagcgtgatccgtggctttagccaagattcatttcgttttagaggaatgatagccagattcaaattaatcatttccttgcattttctatgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38817809 |
gacatgaggagcgtgatccgtggctttagccaagattcatttcgttttagaggaatgatagccagattcaaattaatcatttccttgcattttctatgtc |
38817908 |
T |
|
| Q |
101 |
ttatattatttatttaaagtggctctaggcttagcctttatcaggggaatattatgaagaactagaccttgaaatttccttgttggagaaaggaacattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38817909 |
ttatattatttatttaaagtggctctaggcttagcctttatcaggggaatattatgaagaactagaccttgaaatttccttgttggagaaaggaacattg |
38818008 |
T |
|
| Q |
201 |
tttgaatcttttgtagtaatttcttgagtggttgttaccattagtgctcatctagtataccaattttagaaagcatatgttcagatg |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38818009 |
tttgaatcttttgtagtaatttcttgagtggttgttaccattagtgctcatctagtataccaattttagaaagcatacgttcagatg |
38818095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 39458787 - 39458845
Alignment:
| Q |
127 |
aggcttagcctttatcaggggaatattatgaagaactagaccttgaaatttccttgttg |
185 |
Q |
| |
|
|||| ||||||||||||||||| |||| ||||| |||||||||||||| | ||||||| |
|
|
| T |
39458787 |
aggcctagcctttatcaggggattattgcgaagagctagaccttgaaatatgcttgttg |
39458845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 152 - 287
Target Start/End: Original strand, 12083323 - 12083461
Alignment:
| Q |
152 |
ttatgaagaactagaccttgaaatttccttgttggagaa-aggaacattgtttgaatcttttgtagtaatttctt--gagtggttgttaccattagtgct |
248 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||| ||| ||||||||| |||||||||||||| |||||||||| |||||||| || ||||||| || |
|
|
| T |
12083323 |
ttatgaagaactagaccttgaaatatacttgttgtagattaggaacattatttgaatcttttgttgtaatttcttgagagtggttctttccattagccct |
12083422 |
T |
|
| Q |
249 |
catctagtataccaattttagaaagcatatgttcagatg |
287 |
Q |
| |
|
| || ||||||||| || ||||||||| ||||| ||||| |
|
|
| T |
12083423 |
cttcaagtataccatttgtagaaagcagatgtttagatg |
12083461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 39402749 - 39402676
Alignment:
| Q |
152 |
ttatgaagaactagaccttgaaatttccttgttggagaaaggaacattgtttgaatcttttgtagtaatttcttgag |
228 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| ||||||||| | ||||||||| ||| || ||||||||||||| |
|
|
| T |
39402749 |
ttatgaagaacttcaccttgaaatgtccttgt---agaaaggaaaactgtttgaatatttcgttgtaatttcttgag |
39402676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 20150795 - 20150870
Alignment:
| Q |
150 |
tattatgaagaactagaccttgaaatttccttgttggagaaaggaacattgtttgaatcttttgtagtaatttcttgag |
228 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||| || ||||||||||| |||||||||| |||| || ||||| |
|
|
| T |
20150795 |
tattacgacgaactagaccttgaaatatccttgttgtcga---gaacattgtttcaatcttttgttgtaaatttttgag |
20150870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University