View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7956_low_18 (Length: 292)
Name: NF7956_low_18
Description: NF7956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7956_low_18 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 41479116 - 41479389
Alignment:
| Q |
19 |
ttcaccctattatatatcttatgttatattatcactacactaatttatcttgaaagatttaatacctcaactaatttacaaattttctgtaggtagctgt |
118 |
Q |
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| T |
41479116 |
ttcaccctagtatatatcttatgttatatcatcactacactaatttatcttgaaagatttaatacctcaactaatttacaaattttctgtaggtagctgt |
41479215 |
T |
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| Q |
119 |
gttgcacatctttgtgcataggctagtttatctggtgatggcagtctgagtgggctgggagcattttaatggtctgctgctgagggaatattttctggtt |
218 |
Q |
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| T |
41479216 |
gttgcacatctttgtgcataggctagtttatctggtgatggcagtctgagtgggctgggagcattttaatggtctgctgctgagggaatattttctggtt |
41479315 |
T |
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| Q |
219 |
tggatttctgcttggtcttgtgagcaagttttggaacttcagcaagcttgttgatttattctacagttgattga |
292 |
Q |
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| T |
41479316 |
tggatttctgcttggtcttgtgagcaagttttggaacttcagcaagcttgttgatttattctacagttgattga |
41479389 |
T |
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Target: chr1 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 58 - 219
Target Start/End: Original strand, 36377692 - 36377866
Alignment:
| Q |
58 |
ctaatttatcttgaaagatttaatacctcaactaatttacaaattttctgtaggtagctgtgttgcacatctttgtgcataggctagtttatctggtgat |
157 |
Q |
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| T |
36377692 |
ctaatttatcttgaaagatttaacgcctcaactaatttacaaattttctgtaggtagctgtattgcacatctttgtgcataggctagtttatctggtgat |
36377791 |
T |
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| Q |
158 |
ggc-------------agtctgagtgggctgggagcattttaatggtctgctgctgagggaatattttctggttt |
219 |
Q |
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| T |
36377792 |
ggcagtttagcaactgagtctgagtgggctgggagcattttaatggtctgctgctgagggaatattttctggttt |
36377866 |
T |
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