View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7956_low_19 (Length: 285)
Name: NF7956_low_19
Description: NF7956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7956_low_19 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: scaffold0013 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 91790 - 92037
Alignment:
| Q |
1 |
tagtgccaactacattatctatcaacaaaattaaacttacctgtgatttcttgatgaaatcatgacctt-cgcaagtactggaccaatttcctcagttag |
99 |
Q |
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| T |
91790 |
tagtgccaactacattatctatcaacaaaattaaacttacctgtgatttcttgatgaaatcatgacctttcgcaagtactgggccaatttcctcagttag |
91889 |
T |
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| Q |
100 |
gccagtggcaagcaaagcttgaacagaaaaactagtattccatccttggctacccaaactctgagttgtattgatagaaaaataatttaattatatgtat |
199 |
Q |
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| T |
91890 |
gccagtggcaagcaaagcttgaacagaaaaactagtattccatccttggctacccaaactctgagttgtattgatagaaaaataatttaattatgtgtat |
91989 |
T |
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| Q |
200 |
accatccattataatcataataatagaagtaaaaataagagttaatat |
247 |
Q |
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| T |
91990 |
accatccattataatcataataacagaagtaaaaataagagttaatat |
92037 |
T |
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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 190
Target Start/End: Complemental strand, 104719 - 104554
Alignment:
| Q |
26 |
caaaattaaacttacctgtgatttcttgatgaaatcatgaccttcg-caagtactggaccaatttcctcagttaggccagtggcaagcaaagcttgaaca |
124 |
Q |
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| T |
104719 |
caaaattaaacatacctgagatttcttaatgaaatcatgtcctttggcaagtgcaggttcgatttcatcatttaggttagcggcaagcaaagcttgaacg |
104620 |
T |
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| Q |
125 |
gaaaaactagtattccatccttggctacccaaactctgagttgtattgatagaaaaataatttaat |
190 |
Q |
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| T |
104619 |
gcaaaaccagcatcccattcttggctaccaaaactctgcattgtattgacaggaaaattatttaat |
104554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 180
Target Start/End: Complemental strand, 165325 - 165170
Alignment:
| Q |
26 |
caaaattaaacttacctgtgatttcttgatgaaatcatgaccttcg-caagtactggaccaatttcctcagttaggccagtggcaagcaaagcttgaaca |
124 |
Q |
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| T |
165325 |
caaaattaagcatacctgagatttcttgatgaaatcatgtccttttacaagtgcaggagcagtttcctcaattaggttggtggcaagcaaagcttgaatg |
165226 |
T |
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| Q |
125 |
gaaaaactagtattccatccttggctacccaaactctgagttgtattgatagaaaa |
180 |
Q |
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| T |
165225 |
gcaaaactagtatcccatacttggctcccaaaagtctgcattgtattgatacaaaa |
165170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 5669526 - 5669619
Alignment:
| Q |
27 |
aaaattaaacttacctgtgatttcttgatgaaatcatgaccttc-gcaagtactggaccaatttcctcagttaggccagtggcaagcaaagctt |
119 |
Q |
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| T |
5669526 |
aaaattaagcatacctgagatttcttgatgaattcatgtccttttgccagtgttggaccaatatcctcagttaggttagtggcaagcaaagctt |
5669619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 5690183 - 5690279
Alignment:
| Q |
27 |
aaaattaaacttacctgtgatttcttgatgaaatcatgaccttc-gcaagtactggaccaatttcctcagttaggccagtggcaagcaaagcttgaa |
122 |
Q |
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| T |
5690183 |
aaaactaaacatacctgagaattcttgatgaatttatgtccttttgcaagtgttggaccaatatcctcaattaggttagtggcaagcaaagcttgaa |
5690279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 13053276 - 13053152
Alignment:
| Q |
38 |
tacctgtgatttcttgatgaaatcatgacct-tcgcaagtactggaccaatttcctcagttaggccagtggcaagcaaagcttgaacagaaaaactagta |
136 |
Q |
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| T |
13053276 |
tacctgagatttcttgatgaagtcatgtcctctggcaagtgcaggaccaatttcttcaattaagtttgtggcaagcaaagcttgaacagcaaaacctgca |
13053177 |
T |
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| Q |
137 |
ttccatccttggctacccaaactct |
161 |
Q |
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| T |
13053176 |
tcccattcttgactaccaaaactct |
13053152 |
T |
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