View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7956_low_2 (Length: 559)
Name: NF7956_low_2
Description: NF7956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7956_low_2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 16 - 559
Target Start/End: Complemental strand, 47067844 - 47067308
Alignment:
| Q |
16 |
cctttcgcagccgagagtcttttcatttgcatctataaatttataacccgtgagacagttgcataatggtttatcatccttgaatgtgcagtaactgttt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47067844 |
cctttcgcagccgagagtcttttcatttgcatctataaatttataacccgtgagacagttgcataatggtttatcatccttgaatgtgcagtaactgttt |
47067745 |
T |
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| Q |
116 |
aagctacaaaacccctttacttcacaggggttattccccggaaaacttgtgataattttgtcactgccattgttaacatgatgagcatgcagccgaaaaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47067744 |
aagctacaaaacccctttacttcacaggggttattccccggaaaacttgcgataattttgtcactgccattgttaacatgacgagcatgcagccgaaaaa |
47067645 |
T |
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| Q |
216 |
ccccatcaaaatcaagggttgcacgataaatagtctggtttccgccagtctcttgctggtcctcgtcagcatcattcaaagttttaataaggctagaatc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47067644 |
ccccatcaaaatcaagggttgcacgataaatagtctggtttccgccagtctcttgctggtcctcgtcagcatcattcaaaattttaataaggctagaatc |
47067545 |
T |
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| Q |
316 |
actgctgagtgctgtcattcaagatctgaagtaaacctgtactgttaaggtaaagatgatgtttgacattggcactaacagtatcagaggcccaataagc |
415 |
Q |
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||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47067544 |
act-------gctgtcatccaagatctgaagtaaacctgtacttttaaggtaaagatgatgtttgacattggcactaacagtatcagaggcccaataagc |
47067452 |
T |
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| Q |
416 |
atcccaacgtgtttcagctatgtatgctggatacagaacaagatttccatcaacctgcatgttgagttgaaaccttccggttgagtgattggtctctgat |
515 |
Q |
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| T |
47067451 |
atcccaacttgtttcagctatgtatgctggatacagaacaagatttccatcaacctgcatgttgagttgaaaccttccggttgagtgattggtctctgat |
47067352 |
T |
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| Q |
516 |
aaactagaggacagtttgcctccacaaggtagagattgactctc |
559 |
Q |
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| T |
47067351 |
aaactagaggacagtttgcctccacaaggtagagattgactctc |
47067308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 16 - 559
Target Start/End: Original strand, 47076483 - 47077016
Alignment:
| Q |
16 |
cctttcgcagccgagagtcttttcatttgcatctataaatttataacccgtgagacagttgcataatggtttatcatccttgaatgtgcagtaactgttt |
115 |
Q |
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|||||| ||||| ||||| | ||||||||||||||||| ||||||||||| |||||| ||||||| |||||| || || | |||||||||| ||||||| |
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| T |
47076483 |
cctttcacagccaagagtatcttcatttgcatctataagtttataacccgggagacaattgcatactggtttgtcgtcatcgaatgtgcagaaactgttg |
47076582 |
T |
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| Q |
116 |
aagctacaaaacccctttacttcacaggggttattccccggaaaacttgtgataattttgtcactgccattgttaacatgatgagcatgcagccgaaaaa |
215 |
Q |
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||| ||||||||||||||| | || || || ||||| || ||||| ||||| ||| ||| |||||||||||||||| ||||| ||||| ||||| |
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| T |
47076583 |
tagccacaaaacccctttacatagcatggattcttccctggccaacttcccataataatgttacttccattgttaacatgataagcatacagcctaaaaa |
47076682 |
T |
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| Q |
216 |
ccccatcaaaatcaagggttgcacgataaatagtctggtttccgccagtctcttgctggtcctcgtcagcatcattcaaagttttaataaggctagaatc |
315 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||| | || ||||| || |||| || | |||||| ||||| |||||||||| |
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| T |
47076683 |
ccccatcaaaatcaagagttgcacgataaatagtctggtttcc---agtgttctgttggtcttcttcagtattacgcaaagtggtaatacggctagaatc |
47076779 |
T |
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| Q |
316 |
actgctgagtgctgtcattcaagatctgaagtaaacctgtactgttaaggtaaagatgatgtttgacattggcactaacagtatcagaggcccaataagc |
415 |
Q |
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|||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47076780 |
actgct-------gtcattccagatctgcagtaaacctgtactgttaaggtaaagatgatgtttgacattggcactaacagtatcagaggtccaataaga |
47076872 |
T |
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| Q |
416 |
atcccaacgtgtttcagctatgtatgctggatacagaacaagatttccatcaacctgcatgttgagttgaaaccttccggttgagtgattggtctctgat |
515 |
Q |
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|||||||| ||||| | | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47076873 |
atcccaacctgtttttgttgtgtatgctgggtacagaacaagatttccatcaacctgcatgttgagttgaaaccttccggttgagtgattggtctctgat |
47076972 |
T |
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| Q |
516 |
aaactagaggacagtttgcctccacaaggtagagattgactctc |
559 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
47076973 |
aaactagaggacagttggcctccacaaggcagagattgactctc |
47077016 |
T |
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