View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7956_low_20 (Length: 263)
Name: NF7956_low_20
Description: NF7956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7956_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 14957118 - 14957342
Alignment:
| Q |
20 |
aaatatggagttcatgtttacttcctttatctaccatttatttactatttatttatttgagagtagataaatatgaatgggagattaatgagacccatag |
119 |
Q |
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| T |
14957118 |
aaatatggagttcatgtttacttcctttatctaccatttatttactatttatttatttgagagtaaataaatatgaatgggagattaatgagacccagag |
14957217 |
T |
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| Q |
120 |
agtccagaaaggtccatttgttgaaatagatcttactagtgcttgtgtttttatctctctcataaatagtgtagataagtgaagcaaatttacactcaaa |
219 |
Q |
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| T |
14957218 |
agtccagaaaggtccatttgttgaaatagatcttactagtgcttgtgtttttatctctctcataaatagtgtagataagtgaagcaaatttacactcaaa |
14957317 |
T |
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| Q |
220 |
atataggaactctttgagtaaaggt |
244 |
Q |
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| T |
14957318 |
atataggaactctttgagtaaaggt |
14957342 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 27162290 - 27162330
Alignment:
| Q |
35 |
gtttacttcctttatctaccatttatttactatttatttat |
75 |
Q |
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| T |
27162290 |
gtttgcttcatttatctaccttttatttactatttatttat |
27162330 |
T |
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