View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7956_low_5 (Length: 509)
Name: NF7956_low_5
Description: NF7956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7956_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 12 - 491
Target Start/End: Original strand, 38342409 - 38342893
Alignment:
| Q |
12 |
aagaatatggttgtggtaaataggtccaggtatgtaatgaattcaattgtctgtgatggcttgaatatatttaatacaacaagttgtgtcattgtgatta |
111 |
Q |
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| T |
38342409 |
aagaaaatggttgtggtaaataggtctgggtatgtaatgaattcaattgtctgtgatggcttgaatatatttaatacaacaagttgtgtcattgtgatta |
38342508 |
T |
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| Q |
112 |
ttcataagatgcatctatgtggatacaattctttgattgagaaagaagtgagcatacttgg----ttctgttctgctacacaccgcagaagttttttggc |
207 |
Q |
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| T |
38342509 |
ttcataagatgcatctatgtggatacaattctttgattgagaaagaagtgagcatacttggttggttctgttctgctacacaccgcagaagttttttggc |
38342608 |
T |
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| Q |
208 |
ttctagtggtgtaattgaatttggtataagtgtagtgtgaggtgctgagtgcagaagtttatcagtgtgcagcaatgtgactgatttgtgtaatcaaact |
307 |
Q |
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| T |
38342609 |
ttggagtggtgcaattgaatttggtataagtgtagtgtgaggtgctgggtgcagaagtttatcagtgtgcagcaatgtgactgatttatgtaatcaaact |
38342708 |
T |
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| Q |
308 |
gtaactttcctttcttaggactacttgtggactgtggtgatgacaggatatttagttattaaatattaatacaatgttttgcttattcagaaggnnnnnn |
407 |
Q |
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| T |
38342709 |
gtaactttcctttcttaggactacttgtggactgtggtgatgacaggatatttagttattaaatattaatacaatgttttgcttattcagaagaaaaaaa |
38342808 |
T |
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| Q |
408 |
ntcaggtatttacatttttctcttcagtatcatcttgcagc-aaaaaattagccaatgtgagactatctgcagaatttgtcaact |
491 |
Q |
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| T |
38342809 |
atcaggtatttacatttttctcttcagtatcatcttgcagcaaaaaaattagccaatgtgggactatctgcagaatttgtcaact |
38342893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 489
Target Start/End: Original strand, 38334142 - 38334217
Alignment:
| Q |
414 |
tatttacatttttctcttcagtatcatcttgcagcaaaaaattagccaatgtgagactatctgcagaatttgtcaa |
489 |
Q |
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| T |
38334142 |
tatttacttctttctctccagcatcgtcttgctgcaaaaggtcagccaatgtgggactatctggagaatttgtcaa |
38334217 |
T |
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