View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7956_low_7 (Length: 501)

Name: NF7956_low_7
Description: NF7956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7956_low_7
NF7956_low_7
[»] scaffold0627 (1 HSPs)
scaffold0627 (1-483)||(5079-5567)
[»] chr6 (1 HSPs)
chr6 (3-483)||(16716780-16717278)
[»] chr5 (21 HSPs)
chr5 (3-381)||(8547293-8547689)
chr5 (170-280)||(9074130-9074240)
chr5 (3-89)||(8637749-8637835)
chr5 (1-74)||(2873690-2873763)
chr5 (3-82)||(9073888-9073967)
chr5 (3-82)||(8529808-8529887)
chr5 (1-74)||(2844244-2844317)
chr5 (1-74)||(2856077-2856150)
chr5 (134-283)||(8529538-8529687)
chr5 (3-82)||(1599456-1599535)
chr5 (158-280)||(1599680-1599802)
chr5 (3-82)||(8536372-8536451)
chr5 (1-74)||(2904196-2904269)
chr5 (134-275)||(8536110-8536251)
chr5 (427-468)||(8547747-8547788)
chr5 (3-89)||(8645094-8645180)
chr5 (171-284)||(2844444-2844557)
chr5 (171-284)||(2873887-2874000)
chr5 (171-284)||(2904393-2904506)
chr5 (171-245)||(2856277-2856351)
chr5 (325-371)||(8536026-8536072)
[»] chr4 (2 HSPs)
chr4 (1-82)||(9443969-9444050)
chr4 (170-283)||(9443699-9443812)
[»] chr7 (6 HSPs)
chr7 (165-284)||(35780428-35780548)
chr7 (3-82)||(48361008-48361087)
chr7 (134-281)||(48361208-48361355)
chr7 (4-89)||(35780705-35780790)
chr7 (325-371)||(35780338-35780384)
chr7 (325-371)||(48361387-48361433)


Alignment Details
Target: scaffold0627 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Complemental strand, 5567 - 5079
Alignment:
Q  1 tataccttcttgaatgcgatcctgaaaagtttgagattggaagcaacaatcatgtgaagcttgagcctatattcaggcttccccttcgtggtgatgtcga 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |    
T  5567 tataccttcttgaatgcgatcctaaaaagtttgagattggaagcaacaatcatgtgaagcttgagcctatattcaggcttactcttcgtggtgatgtcaa 5468  T
Q  101 atcacttaggataaagtataaatctaagcacccttatatcgcttgtaatagagatcgtgataattttagtattgtgaatccatgtaatggcttgctatgt 200  Q
    |||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||    
T  5467 atcacttaggatgaagtataaatctaagcacccttatattgcttgcaatagagatcgcgataattttagtattgtgaattcctgtaatggcttgctatgt 5368  T
Q  201 ttgtctcaaccaactaccggaaaccctttagtgatctgcaacccattcatgggggagttcataagacttcctgaagctactacggttcgtatgccacatg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5367 ttgtctcaaccaactaccggaaaccctttagtgatctgcaacccattcatgggggagttcataagacttcctgaagctaatacggttcgtatgccacatg 5268  T
Q  301 acacggttcgtgtaataggacaagaagctggttttggtttctatcctaagactaatgaatataaagtgatacatatttgga---gaagtgttatacgtgt 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  5267 acacggttcgtgtaataggacaagaagctggttttggtttctatcctacgactaatgaatataaagtgatacatatttggagaagaagtgttatacgtgt 5168  T
Q  398 caat---tcctcggacgttgagcatgtgttcgttgttgagatacacacactcggaacaccaacatggagaaatatcaatgtggatcctc 483  Q
    ||||   ||||||||||| |||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5167 caattcctcctcggacgtagagcatgtgttccttgtcgagatacacacactcggaacatcaacatggagaaatatcaatgtggatcctc 5079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 3 - 483
Target Start/End: Complemental strand, 16717278 - 16716780
Alignment:
Q  3 taccttcttgaatgcgatcctgaaaagtttgagattggaagcaacaatcatgtgaagcttgagcctatattcaggcttccccttcgtggtgatgtcgaat 102  Q
    |||||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||| |||    
T  16717278 taccttctagagtgcgatccagaaaagtttgagattggaagcaacaatcatgtgaatcttgagcctatattcagacttcctcttcgcggtgatgtcaaat 16717179  T
Q  103 cacttaggat---------------aaagtataaatctaagcacccttatatcgcttgtaatagagatcgtgataattttagtattgtgaatccatgtaa 187  Q
    ||||| ||||               |||| ||||||  ||||||  |||||| ||| | || || ||||||||||| |||| |||||||||| |||||||    
T  16717178 cacttgggatgaaaagtgacaagataaagaataaatacaagcacgtttatattgctggcaacagtgatcgtgataagtttaatattgtgaattcatgtaa 16717079  T
Q  188 tggcttgctatgtttgtctcaaccaactaccggaaaccctttagtgatctgcaacccattcatgggggagttcataagacttcctgaagctactacggtt 287  Q
    ||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||    
T  16717078 tggcttgctatgtttgtctgaaccaactactggaaaccctatagtgatctgcaacccattcatgggggaattcataagacttcctgaaactactacagtt 16716979  T
Q  288 cgtatgccacatgacacggttcgtgtaataggacaagaagctggttttggtttctatcctaagactaatgaatataaagtgatacatattt---ggagaa 384  Q
    ||||||||  |||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||||||    
T  16716978 cgtatgccgaatgacagggttcatgtaataggacaagaagctggttttggtttctatcctaaaactaatgaatataaagtgatacatatttggaggagaa 16716879  T
Q  385 gtgttatacgtgtcaattcctcggacgttgagcatgtgttcgttgttgagatacacacactcggaacaccaacatggagaaatatcaatgtggatcctc 483  Q
    ||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16716878 gtgttatacatgtcaattcctcggactttgaacatgtgttccttgttgagatacacacactcggaacaccaacatggagaaatatcaatgtggatcctc 16716780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 3 - 381
Target Start/End: Original strand, 8547293 - 8547689
Alignment:
Q  3 taccttcttgaatgcgatcctgaaaagtttgagattggaagcaacaatcatgtgaagcttgagcctatattcaggcttccccttcgtggtgatgtcgaat 102  Q
    |||| |||||| || || |||||||||||  ||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||| || || |||    
T  8547293 taccatcttgagtgtgagcctgaaaagttcaagattggaagcaacaatcatgtgaagcttgatcctatattcaagcttcctcttcgtggttatatcaaat 8547392  T
Q  103 cacttagg---------------ataaagtataaatctaagcacccttatatcgcttgtaatagagatcgtgataattttagtattgtgaatccatgtaa 187  Q
    || |||||               || ||| ||||||| |||| ||||||||| ||||| || |||||||||||| |||||  |||||||||| | || |     
T  8547393 catttagggagaaaagtgacaggatcaagaataaatccaagcgcccttatattgcttgcaacagagatcgtgatcattttgatattgtgaattcttgcag 8547492  T
Q  188 tggcttgctatgtttgtctcaaccaactaccggaaaccctttagtgatctgcaacccattcatgggggagttcataagacttcctgaagctactacggtt 287  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| |||  ||||||||||||||||||| ||||||||||||| ||    
T  8547493 tggcttgctttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaatccaatcacaggggagttcataagacttcttgaagctactacgatt 8547592  T
Q  288 cgtatgccacatgacacggttcgtgtaataggacaaga---agctggttttggtttctatcctaagactaatgaatataaagtgatacatatttgga 381  Q
    ||||||||| ||||||| | |  | |  ||   |||||   |||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||    
T  8547593 cgtatgccaaatgacacagcttatattttaaatcaagaagcagctggttgtggtttctatcctaaaactaatgaatataaagtgataaatatttgga 8547689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 170 - 280
Target Start/End: Original strand, 9074130 - 9074240
Alignment:
Q  170 tattgtgaatccatgtaatggcttgctatgtttgtctcaaccaactaccggaaaccctttagtgatctgcaacccattcatgggggagttcataagactt 269  Q
    |||||||||| | || ||||| || || ||||||||| ||||||||||||||||||||| |||||||||||||||| |||  ||||||||||||||||||    
T  9074130 tattgtgaattcttgcaatggtttactttgtttgtctgaaccaactaccggaaacccttcagtgatctgcaacccagtcacaggggagttcataagactt 9074229  T
Q  270 cctgaagctac 280  Q
    |||||||||||    
T  9074230 cctgaagctac 9074240  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 8637835 - 8637749
Alignment:
Q  3 taccttcttgaatgcgatcctgaaaagtttgagattggaagcaacaatcatgtgaagcttgagcctatattcaggcttccccttcgt 89  Q
    ||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||| ||||||    
T  8637835 taccttcttgagtgtgatcatgaaaagtttgagattggaagcaacaatcatgtgaagcttgcgcctatatttaagcttcctcttcgt 8637749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 2873690 - 2873763
Alignment:
Q  1 tataccttcttgaatgcgatcctgaaaagtttgagattggaagcaacaatcatgtgaagcttgagcctatattc 74  Q
    ||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2873690 tataccttcttgagtgcgaagctgaaaagtttgagattggaagcaacaatcatgtgaagcttgaccctatattc 2873763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 9073888 - 9073967
Alignment:
Q  3 taccttcttgaatgcgatcctgaaaagtttgagattggaagcaacaatcatgtgaagcttgagcctatattcaggcttcc 82  Q
    ||||||||||| || || ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||    
T  9073888 taccttcttgagtgtgaacctgaaaagtttgagattggaagcaacaaacatgtcaagcttgagcctatattcaagcttcc 9073967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 8529887 - 8529808
Alignment:
Q  3 taccttcttgaatgcgatcctgaaaagtttgagattggaagcaacaatcatgtgaagcttgagcctatattcaggcttcc 82  Q
    ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||  |||||||||| ||||||    
T  8529887 taccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcatgtcaagcttgcacctatattcaagcttcc 8529808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 2844244 - 2844317
Alignment:
Q  1 tataccttcttgaatgcgatcctgaaaagtttgagattggaagcaacaatcatgtgaagcttgagcctatattc 74  Q
    ||||||||||||| || ||  ||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  2844244 tataccttcttgagtgtgaagctgaaaagtttgagattggaagcaaaaatcatgtgaagcttgaccctatattc 2844317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 2856077 - 2856150
Alignment:
Q  1 tataccttcttgaatgcgatcctgaaaagtttgagattggaagcaacaatcatgtgaagcttgagcctatattc 74  Q
    ||||||||||||| || ||  ||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  2856077 tataccttcttgagtgtgaagctgaaaagtttgagattggaagcaaaaatcatgtgaagcttgaccctatattc 2856150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 283
Target Start/End: Complemental strand, 8529687 - 8529538
Alignment:
Q  134 ttatatcgcttgtaatagagatcgtgataattttagtattgtgaatccatgtaatggcttgctatgtttgtctcaaccaactaccggaaaccctttagtg 233  Q
    |||||| ||||| || ||||||  |||||| |||  |||||||||| | || ||||| || || ||||||||| | ||| ||   ||||||||  |||||    
T  8529687 ttatattgcttgcaacagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccaatagtg 8529588  T
Q  234 atctgcaacccattcatgggggagttcataagacttcctgaagctactac 283  Q
    |||||||||||| ||| ||||||||||||||||||||||||| |||||||    
T  8529587 atctgcaacccagtcacgggggagttcataagacttcctgaatctactac 8529538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 1599456 - 1599535
Alignment:
Q  3 taccttcttgaatgcgatcctgaaaagtttgagattggaagcaacaatcatgtgaagcttgagcctatattcaggcttcc 82  Q
    ||||||||||| || || ||||||||||||||||||||||||||| ||| ||||||||||| |||||| |||| ||||||    
T  1599456 taccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtgtgaagcttgcgcctatgttcaagcttcc 1599535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 280
Target Start/End: Original strand, 1599680 - 1599802
Alignment:
Q  158 tgataattttagtattgtgaatccatgtaatggcttgctatgtttgtctcaaccaactaccggaaaccctttagtgatctgcaacccattcatgggggag 257  Q
    |||||| |||| |||||||||| | || ||||| || || ||||||||| | |||  |  ||||||||| |||||||||||||||||| |||  ||||||    
T  1599680 tgataagtttaatattgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtgatctgcaacccaatcactggggag 1599779  T
Q  258 ttcataagacttcctgaagctac 280  Q
    |||||||||||||||||| ||||    
T  1599780 ttcataagacttcctgaatctac 1599802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 8536451 - 8536372
Alignment:
Q  3 taccttcttgaatgcgatcctgaaaagtttgagattggaagcaacaatcatgtgaagcttgagcctatattcaggcttcc 82  Q
    ||||||||||| |  |||||| ||||||||||||||||||||||| |||||||||| |||| |||||| |||| ||||||    
T  8536451 taccttcttgagtctgatcctcaaaagtttgagattggaagcaacgatcatgtgaaacttgtgcctatgttcaagcttcc 8536372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 2904196 - 2904269
Alignment:
Q  1 tataccttcttgaatgcgatcctgaaaagtttgagattggaagcaacaatcatgtgaagcttgagcctatattc 74  Q
    ||||||||||||| ||||| |||||| |||| ||| |||||| |||||||| |||||||||| |||||||||||    
T  2904196 tataccttcttgagtgcgaacctgaatagttcgagtttggaaccaacaatcttgtgaagcttaagcctatattc 2904269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 275
Target Start/End: Complemental strand, 8536251 - 8536110
Alignment:
Q  134 ttatatcgcttgtaatagagatcgtgataattttagtattgtgaatccatgtaatggcttgctatgtttgtctcaaccaactaccggaaaccctttagtg 233  Q
    |||||| ||||| || ||||||  |||||| |||  |||||||||| | || ||||| || || ||||||||| | ||| ||   |||||||| ||||||    
T  8536251 ttatattgcttgcaaaagagattttgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtg 8536152  T
Q  234 atctgcaacccattcatgggggagttcataagacttcctgaa 275  Q
    |||||||||||| |||  |||||||| |||||||||||||||    
T  8536151 atctgcaacccagtcactggggagtttataagacttcctgaa 8536110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 427 - 468
Target Start/End: Original strand, 8547747 - 8547788
Alignment:
Q  427 ttgttgagatacacacactcggaacaccaacatggagaaata 468  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8547747 ttgttgagatacacacactcggaacaccaacatggagaaata 8547788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 8645180 - 8645094
Alignment:
Q  3 taccttcttgaatgcgatcctgaaaagtttgagattggaagcaacaatcatgtgaagcttgagcctatattcaggcttccccttcgt 89  Q
    ||||||||||| || ||||||||||||||| | ||||||||||||| || ||| |||||||  |||||||| | |||||| ||||||    
T  8645180 taccttcttgagtgtgatcctgaaaagtttcaaattggaagcaacagtcgtgtcaagcttgcacctatatttaagcttcctcttcgt 8645094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 284
Target Start/End: Original strand, 2844444 - 2844557
Alignment:
Q  171 attgtgaatccatgtaatggcttgctatgtttgtctcaaccaactaccggaaaccctttagtgatctgcaacccattcatgggggagttcataagacttc 270  Q
    ||||||||| | || ||||||||||| ||||| ||| || || ||| ||||| |||||||||||| ||||||||| | | | |||| |||| || |||||    
T  2844444 attgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaacccagtaacgagggaattcacaatacttc 2844543  T
Q  271 ctgaagctactacg 284  Q
    |||||  |||||||    
T  2844544 ctgaacttactacg 2844557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 284
Target Start/End: Original strand, 2873887 - 2874000
Alignment:
Q  171 attgtgaatccatgtaatggcttgctatgtttgtctcaaccaactaccggaaaccctttagtgatctgcaacccattcatgggggagttcataagacttc 270  Q
    ||||||||| | || ||||||||||| ||||| ||| || || ||| ||||| |||||||||||| ||||||||| | | | |||| |||| || |||||    
T  2873887 attgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaacccagtaacgagggaattcacaatacttc 2873986  T
Q  271 ctgaagctactacg 284  Q
    |||||  |||||||    
T  2873987 ctgaacttactacg 2874000  T

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Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 284
Target Start/End: Original strand, 2904393 - 2904506
Alignment:
Q  171 attgtgaatccatgtaatggcttgctatgtttgtctcaaccaactaccggaaaccctttagtgatctgcaacccattcatgggggagttcataagacttc 270  Q
    ||||||||| | || ||||||||||| ||||| ||| || || ||||||||| |||||||| ||| ||||||||| | | | |||| |||| || |||||    
T  2904393 attgtgaattcttgcaatggcttgctttgtttatctgaaacatctaccggaagccctttagcgatttgcaacccagtaacgagggaattcacaatacttc 2904492  T
Q  271 ctgaagctactacg 284  Q
    |||||  |||||||    
T  2904493 ctgaacttactacg 2904506  T

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Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 2856277 - 2856351
Alignment:
Q  171 attgtgaatccatgtaatggcttgctatgtttgtctcaaccaactaccggaaaccctttagtgatctgcaaccca 245  Q
    ||||||||| | || ||||||||||| ||||| ||| || || ||| ||||| |||||||||||| |||||||||    
T  2856277 attgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaaccca 2856351  T

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Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 371
Target Start/End: Complemental strand, 8536072 - 8536026
Alignment:
Q  325 aagctggttttggtttctatcctaagactaatgaatataaagtgata 371  Q
    ||||||||||||||||| | ||||| |||||||||||||| ||||||    
T  8536072 aagctggttttggtttccaacctaaaactaatgaatataaggtgata 8536026  T

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Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 9444050 - 9443969
Alignment:
Q  1 tataccttcttgaatgcgatcctgaaaagtttgagattggaagcaacaatcatgtgaagcttgagcctatattcaggcttcc 82  Q
    ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||  |||||||||| ||||||    
T  9444050 tataccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcatgtcaagcttgcacctatattcaagcttcc 9443969  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 170 - 283
Target Start/End: Complemental strand, 9443812 - 9443699
Alignment:
Q  170 tattgtgaatccatgtaatggcttgctatgtttgtctcaaccaactaccggaaaccctttagtgatctgcaacccattcatgggggagttcataagactt 269  Q
    |||||||||| | || ||||| || || ||||||||| | ||| ||   ||||||||  ||||||||||||||||| ||| |||||||||||||||||||    
T  9443812 tattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccaatagtgatctgcaacccagtcacgggggagttcataagactt 9443713  T
Q  270 cctgaagctactac 283  Q
    |||||| |||||||    
T  9443712 cctgaatctactac 9443699  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 165 - 284
Target Start/End: Complemental strand, 35780548 - 35780428
Alignment:
Q  165 tttagtattgtgaatccatgtaatggcttgctatgtttgtctcaaccaactaccggaaa-ccctttagtgatctgcaacccattcatgggggagttcata 263  Q
    |||| |||||| ||| | || ||||| ||||| ||||||||| | |||  ||||| ||| |||||||||||| ||||||||| ||| |||||||||||||    
T  35780548 tttaatattgtcaattcttgcaatggtttgctttgtttgtctaatccatataccgaaaaaccctttagtgatttgcaacccagtcacgggggagttcata 35780449  T
Q  264 agacttcctgaagctactacg 284  Q
    |||||||||||||||||||||    
T  35780448 agacttcctgaagctactacg 35780428  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 48361008 - 48361087
Alignment:
Q  3 taccttcttgaatgcgatcctgaaaagtttgagattggaagcaacaatcatgtgaagcttgagcctatattcaggcttcc 82  Q
    ||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||   |||||||||| ||||||    
T  48361008 taccttcttgagtgtgatcctgaaaagtttgagattggaagcaacaaccatgtgaagcttacacctatattcaagcttcc 48361087  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 134 - 281
Target Start/End: Original strand, 48361208 - 48361355
Alignment:
Q  134 ttatatcgcttgtaatagagatcgtgataattttagtattgtgaatccatgtaatggcttgctatgtttgtctcaaccaactaccggaaaccctttagtg 233  Q
    |||||| ||||| || ||||||  |||||| |||  |||||||||| | || ||||| || || ||||||||| | ||| ||   |||||||| ||||||    
T  48361208 ttatattgcttgcaacagagattttgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgatccatctttgggaaacccgttagtg 48361307  T
Q  234 atctgcaacccattcatgggggagttcataagacttcctgaagctact 281  Q
    |||||||||||| |||  |||||||||||||||||||||||| |||||    
T  48361308 atctgcaacccagtcacaggggagttcataagacttcctgaatctact 48361355  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 35780790 - 35780705
Alignment:
Q  4 accttcttgaatgcgatcctgaaaagtttgagattggaagcaacaatcatgtgaagcttgagcctatattcaggcttccccttcgt 89  Q
    |||||||||| || || ||||||||||||||| ||||||| ||||||| |||||||||||| || ||||| | |||||| ||||||    
T  35780790 accttcttgagtgtgagcctgaaaagtttgagtttggaaggaacaatcttgtgaagcttgaccccatatttaagcttcctcttcgt 35780705  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 371
Target Start/End: Complemental strand, 35780384 - 35780338
Alignment:
Q  325 aagctggttttggtttctatcctaagactaatgaatataaagtgata 371  Q
    ||||||||||||||||| | ||||| |||||||||||||| ||||||    
T  35780384 aagctggttttggtttccaacctaaaactaatgaatataaggtgata 35780338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 371
Target Start/End: Original strand, 48361387 - 48361433
Alignment:
Q  325 aagctggttttggtttctatcctaagactaatgaatataaagtgata 371  Q
    ||||||||||||||||| | ||||| |||||||||||||| ||||||    
T  48361387 aagctggttttggtttccaacctaaaactaatgaatataaggtgata 48361433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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