View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7956_low_8 (Length: 490)
Name: NF7956_low_8
Description: NF7956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7956_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 7858178 - 7858497
Alignment:
| Q |
18 |
cgtctgagatgacgaaacgctcaggcaaacacatgcttagaagaacggtatagaaaggacataatcaattgttctatagctacttatctgaaagtttggt |
117 |
Q |
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| T |
7858178 |
cgtctgagatgacgaaacgctcaggcaaacacatgcttagaagaacggtatagaaaggacataatc--ttgttttatagctacttatctgaaaatttggt |
7858275 |
T |
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| Q |
118 |
atacatagaggctctgttccggcaattttttcatttgcaaagccatatcttgctcacaggtgtgtagaagtttaatcatgatgggtctttcactattcca |
217 |
Q |
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| T |
7858276 |
atacatagaggctctattccggaaaaattttcatttgcaaagccatatcttgctcacaggtgtgtagaagtttaatcatgatgggtctttcactattcca |
7858375 |
T |
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| Q |
218 |
aaaatgtattattcatttattgacataagaacatgcgatgacagtatatttgatttggtatnnnnnnnncaattgctcaaaaagaagaaaagacaatata |
317 |
Q |
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| T |
7858376 |
aaaatgtattattcatttattgacataagaatatgtgatgacagtatatttgatttggtataaaaaaaacaattgctcaaaaagaaaaaaagacaatata |
7858475 |
T |
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| Q |
318 |
ttttgatcatgtttgatttagc |
339 |
Q |
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| T |
7858476 |
ttttgatcatgtttgatttagc |
7858497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 382 - 474
Target Start/End: Original strand, 7858523 - 7858615
Alignment:
| Q |
382 |
tgtgcttactcattttaagttgtcgatggttgcataagtagagctttaccaatggtgcaaccactaaaccacatgaattgctcgagtgagtta |
474 |
Q |
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| T |
7858523 |
tgtgcttactcattttaagttgtcgatggttgcataagtagagctttaccaatggtgcaaccactaaaccacatgaattgctcgagtgagtta |
7858615 |
T |
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