View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7956_low_9 (Length: 480)
Name: NF7956_low_9
Description: NF7956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7956_low_9 |
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| [»] scaffold0457 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Complemental strand, 24523848 - 24523388
Alignment:
| Q |
18 |
aatacaaaagcaagacataaatgtacagacatgcaaaccttaaatccatgttctccaa----------ggccgtgatcagaaaacatttgggccctgttt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||| |||||||| |
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| T |
24523848 |
aatacaaaagcaagacataaatgtacagacatgcaaaccttaaattcatgttctccaacaggaaaggaggtcgtgatcagaaaacatttggaccctgttt |
24523749 |
T |
|
| Q |
108 |
ctattatacgacacgagcggatttt-gcagccacaaccacattatgtgtctgctataagactaaatatagagagacaaaccttcaagttttagaatctcc |
206 |
Q |
| |
|
|| |||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24523748 |
ctgttatacgacacgagaggatttttgcagccacaaccacattatgtgtctgctagaagactaaatatagagagacaaaccttcaagttttagaatctcc |
24523649 |
T |
|
| Q |
207 |
ttgatactagctacaatatatagcagtagcacctaaatgtccatatgcagtacttaggatcaaaagtttaggtttatgatcacaattcataaagatgtca |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24523648 |
ttgatactagctacaatatatagcagtagcacctaaatgtccatatgcagtacttaggatcaaaagtttaggtttatgatcacaattcataaagatgtca |
24523549 |
T |
|
| Q |
307 |
acaagca-ttttgttggaattatgattgttccatcttaaaaatgatggttttggatttccaaattgttatttgtatttccaaattctattttgaaaaaat |
405 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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|
| T |
24523548 |
acaagcatttttgttggaattatgattgttccatcttaaaaatgatggttttggatttccaaatagttatttgtatttccaaattctattttg-aaaaat |
24523450 |
T |
|
| Q |
406 |
aattttgaagttg--tataggccgagtcacgacaatatcactctttctttaagacgcttcat |
465 |
Q |
| |
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||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
24523449 |
aattttgaagttgtttataggttgagtcacgacaatatcactctttctttaagatgcttcat |
24523388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 395
Target Start/End: Complemental strand, 5271580 - 5271539
Alignment:
| Q |
354 |
ttttggatttccaaattgttatttgtatttccaaattctatt |
395 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||| |
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|
| T |
5271580 |
ttttggatttccaaactgttatttgaatttccaaattctatt |
5271539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 403
Target Start/End: Original strand, 23093111 - 23093163
Alignment:
| Q |
353 |
gttttggatttccaaattgtt--atttgtatttccaaattctattttgaaaaa |
403 |
Q |
| |
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|||||||||||| ||| |||| ||||| |||||||||||||||||||||||| |
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|
| T |
23093111 |
gttttggatttcaaaactgttgtatttggatttccaaattctattttgaaaaa |
23093163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 85 - 465
Target Start/End: Complemental strand, 9122501 - 9122151
Alignment:
| Q |
85 |
cagaaaacatttgggccctgtttctattatacgacacgagcggattttgcagccacaaccacattatgtgtctgctataagactaaatatagagagacaa |
184 |
Q |
| |
|
|||||||||||||| || ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9122501 |
cagaaaacatttggaccttgtttctgtaatacgacacgagcggattttgcagccacaaccacattatgtgtctgctagaagactaaatatagagagacaa |
9122402 |
T |
|
| Q |
185 |
accttcaagttttagaatctccttgatactagctacaatatatagcagtagcacctaaatgtccatatgcagtacttaggatcaaaagtttaggtttatg |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9122401 |
accttcaagttttagaatctccttgatactagctacaatatatagcagtagcacctaaatgtccatatgcagtacttaggatcaaaagtttaggtttatg |
9122302 |
T |
|
| Q |
285 |
atcacaattcataaagatgtcaacaagcattttgttggaattatgattgttccatcttaaaaatgatggttttggatttccaaattgttatttgtatttc |
384 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9122301 |
atca------------atgtcaacaagcattttgttggaattatgattgttccatcttaaaaatgatggttttggatttcc------------------- |
9122233 |
T |
|
| Q |
385 |
caaattctattttgaaaaaataattttgaagttg--tataggccgagtcacgacaatatcactctttctttaagacgcttcat |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9122232 |
-aaattctattttgaaaaaataattttgaagttgtttataggttgagtcacgacaatatcactctttctttaagacgcttcat |
9122151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 129 - 465
Target Start/End: Complemental strand, 9113577 - 9113271
Alignment:
| Q |
129 |
ttttgcagccacaaccacattatgtgtctgctataagactaaatatagagagacaaaccttcaagttttagaatctccttgatactagctacaatatata |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9113577 |
ttttgcagccacaaccacattatgtgtctgctagaagactaaatatagagagacaaaccttcaagttttagaatctccttgatactagctgcaatatata |
9113478 |
T |
|
| Q |
229 |
gcagtagcacctaaatgtccatatgcagtacttaggatcaaaagtttaggtttatgatcacaattcataaagatgtcaacaagcattttgttggaattat |
328 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
9113477 |
gcagtggcacctaaatgtccatatgcagtacttaggatcaaaattttaggtttatgatca------------atgtcaacaagcattttgttggaattat |
9113390 |
T |
|
| Q |
329 |
gattgttccatcttaaaaatgatggttttggatttccaaattgttatttgtatttccaaattctattttgaaaaaataattttgaagttg--tataggcc |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9113389 |
gattgttccatcttaaaaatgatggttttggatttcc--------------------aaattctattttgaaaaaataattttgaagttgtttataggct |
9113310 |
T |
|
| Q |
427 |
gagtcacgacaatatcactctttctttaagacgcttcat |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9113309 |
gagtcacgacaatatcactctttctttaagacgcttcat |
9113271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 85 - 271
Target Start/End: Complemental strand, 9130597 - 9130411
Alignment:
| Q |
85 |
cagaaaacatttgggccctgtttctattatacgacacgagcggattttgcagccacaaccacattatgtgtctgctataagactaaatatagagagacaa |
184 |
Q |
| |
|
|||||||||||||| || ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9130597 |
cagaaaacatttggaccttgtttctgtaatacgacacgagcggattttgcagccacaaccacattatgtgtctgctagaagactaaatatagagagacaa |
9130498 |
T |
|
| Q |
185 |
accttcaagttttagaatctccttgatactagctacaatatatagcagtagcacctaaatgtccatatgcagtacttaggatcaaaa |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9130497 |
accttcaagttttagaatctccttgatactagctacaatatatagcagtagcacctaaatgtccatatgcagtacttaggatcaaaa |
9130411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 403
Target Start/End: Original strand, 16013626 - 16013701
Alignment:
| Q |
330 |
attgttccatcttaaaaatgatggttttggatttccaaattgt--tatttgtatttccaaattctattttgaaaaa |
403 |
Q |
| |
|
|||| ||| |||||||| || |||||||||||||||||| ||| |||||| ||||||||| ||||||| |||||| |
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|
| T |
16013626 |
attgctccttcttaaaattgttggttttggatttccaaactgttgtatttggatttccaaagtctatttcgaaaaa |
16013701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 401
Target Start/End: Original strand, 21671100 - 21671164
Alignment:
| Q |
339 |
tcttaaaaatgatggttttggatttccaaat--tgttatttgtatttccaaattctattttgaaa |
401 |
Q |
| |
|
|||||||| || || ||||||||||||||| | ||||||| |||||||||||||||||||||| |
|
|
| T |
21671100 |
tcttaaaattgttgtttttggatttccaaacaattttatttggatttccaaattctattttgaaa |
21671164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 26287333 - 26287282
Alignment:
| Q |
354 |
ttttggatttccaaattgtt--atttgtatttccaaattctattttgaaaaa |
403 |
Q |
| |
|
||||||||||| ||| |||| ||||| |||||||||||||||||||||||| |
|
|
| T |
26287333 |
ttttggatttcaaaactgttgtatttggatttccaaattctattttgaaaaa |
26287282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 400
Target Start/End: Original strand, 30628759 - 30628827
Alignment:
| Q |
334 |
ttccatcttaaaaatgatggttttggatttccaaattgt--tatttgtatttccaaattctattttgaa |
400 |
Q |
| |
|
|||| ||||||||||| ||||||| | |||||||||||| |||||| ||||| ||||| ||||||||| |
|
|
| T |
30628759 |
ttccgtcttaaaaatgttggtttttggtttccaaattgttgtatttggatttcaaaattatattttgaa |
30628827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 1330 - 1274
Alignment:
| Q |
105 |
tttctattatacgacacgagcggattttgcagccacaaccacattatgtgtctgcta |
161 |
Q |
| |
|
||||| |||||||| | || | |||||||||||||| |||||||||||| ||||||| |
|
|
| T |
1330 |
tttctgttatacgataggaaccgattttgcagccacgaccacattatgtttctgcta |
1274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 396
Target Start/End: Complemental strand, 15991875 - 15991828
Alignment:
| Q |
351 |
tggttttggatttccaaattgtt--atttgtatttccaaattctattt |
396 |
Q |
| |
|
|||||||||| |||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
15991875 |
tggttttggaattccaaattgttgtatttgaatttccaaattctattt |
15991828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 396
Target Start/End: Complemental strand, 15999537 - 15999490
Alignment:
| Q |
351 |
tggttttggatttccaaattgtt--atttgtatttccaaattctattt |
396 |
Q |
| |
|
|||||||||| |||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
15999537 |
tggttttggaattccaaattgttgtatttgaatttccaaattctattt |
15999490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 408
Target Start/End: Original strand, 22609484 - 22609543
Alignment:
| Q |
351 |
tggttttggatttccaaattgtt--atttgtatttccaaattctattttgaaaaaataat |
408 |
Q |
| |
|
||||||||||||||| || | || ||||| |||||||||||||||||| |||||||||| |
|
|
| T |
22609484 |
tggttttggatttccgaactattgtatttggatttccaaattctattttaaaaaaataat |
22609543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 395
Target Start/End: Complemental strand, 37652993 - 37652950
Alignment:
| Q |
354 |
ttttggatttccaaattgt--tatttgtatttccaaattctatt |
395 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
37652993 |
ttttggatttccaaattgttgtatttggatttccaaattctatt |
37652950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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