View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7957_high_2 (Length: 309)
Name: NF7957_high_2
Description: NF7957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7957_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 54848870 - 54848675
Alignment:
| Q |
18 |
agatgagtcaattcatgatgtcaaaatatagaataataaacatatgagcatatatggaagnnnnnnnnttgaatcaatgatcaacgggtcaaatgataaa |
117 |
Q |
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| T |
54848870 |
agatgagtcaattcatgatgtcaaaatatagaataataaacatatgagcatatatggaagaaaaaaaattgaatcaatgatcaacgggtcaaatgattaa |
54848771 |
T |
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| Q |
118 |
aatctcttataaatttaataggtagtctcaagttcaaatatatagaaatcttacaattattgaatcaagatagcatcacattggtgaagattatagtgtt |
217 |
Q |
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| T |
54848770 |
aatctcttataaatttaataggtagtctcaagttcaa----agagaaatcttacaattattgaatcgagatagcatcacattggcgaagattatattgtt |
54848675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 309
Target Start/End: Complemental strand, 54848702 - 54848670
Alignment:
| Q |
277 |
gcatcacattggcgaagattatattgttgagaa |
309 |
Q |
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| T |
54848702 |
gcatcacattggcgaagattatattgttgagaa |
54848670 |
T |
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