View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7957_low_1 (Length: 443)

Name: NF7957_low_1
Description: NF7957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7957_low_1
NF7957_low_1
[»] chr1 (3 HSPs)
chr1 (317-398)||(46902040-46902121)
chr1 (234-324)||(46901929-46902019)
chr1 (170-220)||(46901663-46901713)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 317 - 398
Target Start/End: Original strand, 46902040 - 46902121
Alignment:
Q  317 ctcatgtttttagactcatgtattggaaggtgattccaaaaggagaagcaaaccaaattgatcccagccaatcccactccat 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46902040 ctcatgtttttagactcatgtattggaaggtgattccaaaaggagaagcaaaccaaattgatcccagccaatcccactccat 46902121  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 234 - 324
Target Start/End: Original strand, 46901929 - 46902019
Alignment:
Q  234 aaataaattcatcaagcaaatcttgaacaatcgctcccatgcagatattattgttctgctgctggaactaaacgcaaccatacctcatgtt 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||| ||||    
T  46901929 aaataaattcatcaagcaaatcttgaacaatcgctcccatgcagatattattgttcttgtgctggaactaaatgcaaccatacctcctgtt 46902019  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 46901663 - 46901713
Alignment:
Q  170 tatgttgtgctcttaattgaaaatggttttcacttgtcaattatatctata 220  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46901663 tatgttgtgctcttgattgaaaatggttttcacttgtcaattatatctata 46901713  T

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