View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7958_high_1 (Length: 318)

Name: NF7958_high_1
Description: NF7958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7958_high_1
NF7958_high_1
[»] chr1 (2 HSPs)
chr1 (16-293)||(46639969-46640249)
chr1 (16-301)||(46642256-46642541)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 293
Target Start/End: Complemental strand, 46640249 - 46639969
Alignment:
Q  16 acatttgggccataccagtttaaggtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgctatgtaggctttggtgagtcttgggt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46640249 acatttgggccataccagtttaaggtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgctatgtaggctttggtgagtcttgggt 46640150  T
Q  116 ttagtggtggtagagattggtgtgatgaggggttgatggatatgagaatgacaatgaaggtaattaagaattgtagactataagaggattccattactga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46640149 ttagtggtggtagagattggtgtgatgaggggttgatggatatgagaatgacaatgaaggtaattaagaattgtagactataagaggattccattactga 46640050  T
Q  216 taatggatgggtttgattttgtgttatgggaatgcgaatttatataa---atgtgtgtatgttggagaaatattggaagtt 293  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    |||||||||||||||||||| |||||||||    
T  46640049 taatggatgggtttgattttgtgttatgggaatgtgaatttatataaggggtgtgtgtatgttggagaaattttggaagtt 46639969  T

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Target: chr1; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 301
Target Start/End: Complemental strand, 46642541 - 46642256
Alignment:
Q  16 acatttgggccataccagtttaaggtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgctatgtaggctttggtgagtcttgggt 115  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  46642541 acatttgggccataccagtttaaagtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgctatgtaggctttggtgagtcttggat 46642442  T
Q  116 ttagtggtggtagagattggtgtgatgaggggttgatggatatgagaatgacaatgaaggtaattaagaattgtagactataagaggattccattactga 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || | |||||||||||||||||||||| ||    
T  46642441 ttagtggtggtagagattggtgtgatgaggggttgatggatatgagaatgacaatgaaggaaattaagagttttggactataagaggattccattaccga 46642342  T
Q  216 taatggatgggtttgattttgtgttatgggaatgcgaatttatataaatgtgtgtatgttggagaaatattggaagttagtgtttg 301  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46642341 taatggatgggtttgattttgtgttatgggaatgtgaatttatataaatgtgtgtatgttggagaaatattggaagttagtgtttg 46642256  T

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