View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7958_low_2 (Length: 432)
Name: NF7958_low_2
Description: NF7958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7958_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 10 - 419
Target Start/End: Complemental strand, 52017117 - 52016708
Alignment:
| Q |
10 |
catcatcatcttgaaatgttgacaggagaaaagctcatcat---gttactttgatggcccacttccagaaagtttctcgtcagcaacatcactgggaagg |
106 |
Q |
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| T |
52017117 |
catcatcatcttgaaatgttgacaggagaaaagctcatcatcatgttactttgatggcccactcccagaaagtttctcgtcagcaacatcactgggaagg |
52017018 |
T |
|
| Q |
107 |
tcaaggccctgtggaattttgccaggaaagttggtagaggactcatctgatccaatcgtcctgtaaaaatgaatacacaaaactgaattttgtgcagaag |
206 |
Q |
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| T |
52017017 |
tcaaggccctgtggaattttgccaggaaagttggtagaggactcatctgatccaatcgtcctgtaaaaatgaatacacaa--ctgaattttgtgcagaag |
52016920 |
T |
|
| Q |
207 |
tttgagtaatgagtataagttattctgtaaataggatggatgctcaccccctatcaatgatgaccacggaacgcagctcacaattagcaaagctgtgaaa |
306 |
Q |
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| T |
52016919 |
tttgagtactgagtataagttattctgtaaataggatggatgctcaccccctatcaatgatgaccacggaacgcagctcacaattagcaaagctgtgaaa |
52016820 |
T |
|
| Q |
307 |
atagaagggcaaaatttaactctttaaaagtccaatacaagaaaggcttggcaatgtaaaacttgctgacaagaagaatgacattgtaaaaaactccttg |
406 |
Q |
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| T |
52016819 |
atagaagggcaaaatttaactcttcaaaagtccaatacaagaaaggcttgacaatgtaaaacttgctgacaagaagaatgacaatgt-aaaaactcattg |
52016721 |
T |
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| Q |
407 |
gcaaaaagaatga |
419 |
Q |
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| T |
52016720 |
acaaaaagaatga |
52016708 |
T |
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