View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7958_low_4 (Length: 252)
Name: NF7958_low_4
Description: NF7958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7958_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 31219387 - 31219623
Alignment:
| Q |
1 |
taaaaaagttcgaggtaagaagcctacaacaacattgaaattggaattagggattgcaattctctgtatagtaaaaatggataaaatcgcctatttttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31219387 |
taaaaaagttcgaggtaagaagcctacaacaacattgaaattggaattagggattgcaattctctgtatagtaaaaatggataaaatcgcctatttttta |
31219486 |
T |
|
| Q |
101 |
ggtgtagcaatctagaaaatggcagtgtagttacttgtggatcacataaaatagcagtttgttcaaattccgttatattacagtgctataacgctacact |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31219487 |
ggtgtagcaatctagaaaatggcagtgtagttaattgtggatcacataaaatagcagtttgttcaaattccgttatattacagtgctataacgctacact |
31219586 |
T |
|
| Q |
201 |
atgaactacatcacgtatctcagaacgataacaattt |
237 |
Q |
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||||||||||||||||||| ||||| ||||||||||| |
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| T |
31219587 |
atgaactacatcacgtatcacagaaagataacaattt |
31219623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 31181727 - 31181896
Alignment:
| Q |
1 |
taaaaaagttcgaggtaagaagcctacaacaacattgaaattggaattagggattgcaattctctgtatagtaaaaatggataaaatcgcctatttttta |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||||||| |||| || || |||||||| |
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| T |
31181727 |
taaaaaagttcgaggtaagaagcctacaacaacattgaaattggaattaggtattgcaactctcagtacggtaaaaatgaataatttcaccaatttttta |
31181826 |
T |
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| Q |
101 |
ggtgtagcaatctagaaaatggcagtgtagttacttgtggatcacataaaatagcagtttgttcaaattc |
170 |
Q |
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| T |
31181827 |
gttgtagcaatttagaaaatggcagtgtaatcacttgcggatcacataacatagcagtttgttcaaattc |
31181896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 31200768 - 31200944
Alignment:
| Q |
1 |
taaaaaagttcgaggtaagaagcctacaacaacattgaaattggaattagggattgcaattctctgtatagtaaaaatggataaaatcgcctatttttta |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||||||| |||| || || |||||||| |
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| T |
31200768 |
taaaaaagttcgaggtaagaagcctacaacaacattgaaattggaattaggtattgcaactctcagtacggtaaaaatgaataatttcaccaatttttta |
31200867 |
T |
|
| Q |
101 |
ggtgtagcaatctagaaaatggcagtgtagttacttgtggatcacataaaatagcagtttgttcaaattccgttata |
177 |
Q |
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| T |
31200868 |
gttgtagcaatttagaaaatggcagtgtaatcacttgcagatcacataaaatagcaatttgttcaaattccgctata |
31200944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 38434227 - 38434185
Alignment:
| Q |
148 |
aaaatagcagtttgttcaaattccgttatattacagtgctata |
190 |
Q |
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||||||||||||||||||||||| | ||| ||||||||||||| |
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| T |
38434227 |
aaaatagcagtttgttcaaattctgctatgttacagtgctata |
38434185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 35928193 - 35928161
Alignment:
| Q |
139 |
ggatcacataaaatagcagtttgttcaaattcc |
171 |
Q |
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| T |
35928193 |
ggatcacataaaagagcagtttgttcaaattcc |
35928161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 11814022 - 11813978
Alignment:
| Q |
148 |
aaaatagcagtttgttcaaattccgttatattacagtgctataac |
192 |
Q |
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| T |
11814022 |
aaaatagtggtttgttcaaattccgttacattacagtgttataac |
11813978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 8368594 - 8368634
Alignment:
| Q |
135 |
ttgtggatcacataaaatagcagtttgttcaaattccgtta |
175 |
Q |
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||||||||||| ||||||||| |||||||||||||||||| |
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| T |
8368594 |
ttgtggatcacgcaaaatagcaatttgttcaaattccgtta |
8368634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 176
Target Start/End: Original strand, 49795427 - 49795455
Alignment:
| Q |
148 |
aaaatagcagtttgttcaaattccgttat |
176 |
Q |
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| T |
49795427 |
aaaatagcagtttgttcaaattccgttat |
49795455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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